CRISPRone

CRISPRone report for GCA_007114935.1_ASM711493v1

♦ Seq 1: VIND01000001.1 Clostridioides difficile strain Gcol.A30 .cdiff_col_A30.1, whole genome shotgun sequence

⇒Summary: seq-len = 630322 bp; # of CRISPR array = 4; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190321-191278 bp 2 Locus 2: 399530-400217 bp 3 Locus 3: 478152-481921 bp 4 Locus 4: 512871-513626 bp 5 Locus 5: 606728-607020 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x12 Zoom in on locus 5 x5 CRISPR array Location: 190321-191278 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 190321-191278 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 399530-400217 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 399530-400217 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 478152-478751 bp Gene: unk Type: unknown Location: 478921-479388 bp Gene: COG2378:WYL Type: other Location: 479499-480410 bp Gene: cas14:cas14 Type: Type-V Location: 481049-481921 bp CRISPR array Location: 512871-513626 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 512871-513626 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 606728-607020 bp Num of repeats: 5 Spacers: s36-s39 CRISPR array Location: 606728-607020 bp Num of repeats: 5 Spacers: s36-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 190321-191278 bp]: array | spacers
           [Locus range 399530-400217 bp]: array | spacers
           [Locus range 512871-513626 bp]: array | spacers
           [Locus range 606728-607020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VIND01000011.1 Clostridioides difficile strain Gcol.A30 .cdiff_col_A30.11, whole genome shotgun sequence

⇒Summary: seq-len = 134448 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108431-119343 bp Zoom in on locus 1 x21 CRISPR array Location: 108431-109778 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 108431-109778 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 109962-110228 bp Gene: cd09722:cas1 Type: universal Location: 110231-111211 bp Gene: pfam01930:cas4 Type: Type-I Location: 111214-111732 bp Gene: COG1203:cas3 Type: Type-I Location: 111780-114101 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 114112-114813 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 114815-115729 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 115731-117608 bp Gene: pfam01881:cas6 Type: other Location: 117614-118408 bp Gene: pfam13280:WYL Type: other Location: 118429-119343 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 108431-109778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VIND01000007.1 Clostridioides difficile strain Gcol.A30 .cdiff_col_A30.7, whole genome shotgun sequence

⇒Summary: seq-len = 209417 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135044-142913 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135044-137452 bp Gene: cd09693:cas5 Type: Type-I Location: 137479-138285 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 138301-139317 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 139337-140803 bp Gene: pfam01881:cas6 Type: other Location: 140808-141545 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 141804-142913 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VIND01000009.1 Clostridioides difficile strain Gcol.A30 .cdiff_col_A30.9, whole genome shotgun sequence

⇒Summary: seq-len = 181415 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148498-149188 bp Zoom in on locus 1 x11 CRISPR array Location: 148498-149188 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 148498-149188 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148498-149188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VIND01000003.1 Clostridioides difficile strain Gcol.A30 .cdiff_col_A30.3, whole genome shotgun sequence

⇒Summary: seq-len = 519870 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163675-163901 bp 2 Locus 2: 207453-207811 bp 3 Locus 3: 316170-327164 bp Zoom in on locus 1 x4 Zoom in on locus 2 x6 Zoom in on locus 3 x30 CRISPR array Location: 163675-163901 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 163675-163901 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 207453-207811 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 207453-207811 bp Num of repeats: 6 Spacers: s4-s8 Gene: cd09725:cas2 Type: universal Location: 316170-316460 bp Gene: cd09722:cas1 Type: universal Location: 316671-317678 bp Gene: pfam01930:cas4 Type: Type-I Location: 317704-318198 bp CRISPR array Location: 318283-320222 bp Num of repeats: 30 Spacers: s9-s37 CRISPR array Location: 318283-320222 bp Num of repeats: 30 Spacers: s9-s37 Gene: cd09641:cas3HD Type: Type-I Location: 320412-322970 bp Gene: cd09693:cas5 Type: Type-I Location: 322994-323734 bp Gene: pfam05107:cas7b Type: Type-I Location: 323736-324725 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 324718-326457 bp Gene: cd09652:cas6 Type: other Location: 326469-327164 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 163675-163901 bp]: array | spacers
           [Locus range 207453-207811 bp]: array | spacers
           [Locus range 318283-320222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)