CRISPRone

CRISPRone report for GCA_007114945.1_ASM711494v1

♦ Seq 1: VINE01000009.1 Clostridioides difficile strain Gcol.A29 .cdiff_col_A29.9, whole genome shotgun sequence

⇒Summary: seq-len = 181428 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32258-32949 bp Zoom in on locus 1 x11 CRISPR array Location: 32258-32949 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 32258-32949 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32258-32949 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VINE01000001.1 Clostridioides difficile strain Gcol.A29 .cdiff_col_A29.1, whole genome shotgun sequence

⇒Summary: seq-len = 630322 bp; # of CRISPR array = 4; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190321-191278 bp 2 Locus 2: 399530-400217 bp 3 Locus 3: 478152-481921 bp 4 Locus 4: 512871-513626 bp 5 Locus 5: 606728-607020 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x12 Zoom in on locus 5 x5 CRISPR array Location: 190321-191278 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 190321-191278 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 399530-400217 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 399530-400217 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 478152-478751 bp Gene: unk Type: unknown Location: 478921-479388 bp Gene: COG2378:WYL Type: other Location: 479499-480410 bp Gene: cas14:cas14 Type: Type-V Location: 481049-481921 bp CRISPR array Location: 512871-513626 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 512871-513626 bp Num of repeats: 12 Spacers: s25-s35 CRISPR array Location: 606728-607020 bp Num of repeats: 5 Spacers: s36-s39 CRISPR array Location: 606728-607020 bp Num of repeats: 5 Spacers: s36-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 190321-191278 bp]: array | spacers
           [Locus range 399530-400217 bp]: array | spacers
           [Locus range 512871-513626 bp]: array | spacers
           [Locus range 606728-607020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VINE01000002.1 Clostridioides difficile strain Gcol.A29 .cdiff_col_A29.2, whole genome shotgun sequence

⇒Summary: seq-len = 552434 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192792-203786 bp 2 Locus 2: 312145-312504 bp 3 Locus 3: 356055-356282 bp Zoom in on locus 1 x30 Zoom in on locus 2 x6 Zoom in on locus 3 x4 Gene: cd09652:cas6 Type: other Location: 192792-193487 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 193499-195238 bp Gene: pfam05107:cas7b Type: Type-I Location: 195231-196220 bp Gene: cd09693:cas5 Type: Type-I Location: 196222-196962 bp Gene: cd09641:cas3HD Type: Type-I Location: 196986-199544 bp CRISPR array Location: 199734-201674 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 199734-201674 bp Num of repeats: 30 Spacers: s1-s29 Gene: pfam01930:cas4 Type: Type-I Location: 201758-202252 bp Gene: cd09722:cas1 Type: universal Location: 202278-203285 bp Gene: cd09725:cas2 Type: universal Location: 203496-203786 bp CRISPR array Location: 312145-312504 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 312145-312504 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 356055-356282 bp Num of repeats: 4 Spacers: s35-s37 CRISPR array Location: 356055-356282 bp Num of repeats: 4 Spacers: s35-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 199734-201674 bp]: array | spacers
           [Locus range 312145-312504 bp]: array | spacers
           [Locus range 356055-356282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VINE01000011.1 Clostridioides difficile strain Gcol.A29 .cdiff_col_A29.11, whole genome shotgun sequence

⇒Summary: seq-len = 134457 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15142-26028 bp Zoom in on locus 1 x21 Gene: pfam13280:WYL Type: other Location: 15142-16029 bp Gene: pfam01881:cas6 Type: other Location: 16107-16844 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 16850-18727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 18729-19643 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 19645-20346 bp Gene: COG1203:cas3 Type: Type-I Location: 20357-22678 bp Gene: pfam01930:cas4 Type: Type-I Location: 22693-23244 bp Gene: cd09722:cas1 Type: universal Location: 23247-24227 bp Gene: cd09725:cas2 Type: universal Location: 24230-24496 bp CRISPR array Location: 24680-26028 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 24680-26028 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 24680-26028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VINE01000006.1 Clostridioides difficile strain Gcol.A29 .cdiff_col_A29.6, whole genome shotgun sequence

⇒Summary: seq-len = 209367 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 134994-142863 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 134994-137402 bp Gene: cd09693:cas5 Type: Type-I Location: 137429-138235 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 138251-139267 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 139287-140753 bp Gene: pfam01881:cas6 Type: other Location: 140758-141495 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 141754-142863 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)