CRISPRone

CRISPRone report for GCA_007114985.1_ASM711498v1

♦ Seq 1: VING01000005.1 Clostridioides difficile strain Gcol.A27 .cdiff_col_A27.5, whole genome shotgun sequence

⇒Summary: seq-len = 374298 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45462-45820 bp 2 Locus 2: 119102-127423 bp 3 Locus 3: 290695-291312 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 45462-45820 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 45462-45820 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 119102-120211 bp Gene: unk Type: unknown Location: 120645-120821 bp Gene: pfam01881:cas6 Type: other Location: 120922-121659 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 121664-123139 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 123159-124175 bp Gene: cd09693:cas5 Type: Type-I Location: 124191-124988 bp Gene: cd09641:cas3HD Type: Type-I Location: 125015-127423 bp CRISPR array Location: 290695-291312 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 290695-291312 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45462-45820 bp]: array | spacers
           [Locus range 290695-291312 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VING01000004.1 Clostridioides difficile strain Gcol.A27 .cdiff_col_A27.4, whole genome shotgun sequence

⇒Summary: seq-len = 404642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 311135-311295 bp Zoom in on locus 1 x3 CRISPR array Location: 311135-311295 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 311135-311295 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 311135-311295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VING01000006.1 Clostridioides difficile strain Gcol.A27 .cdiff_col_A27.6, whole genome shotgun sequence

⇒Summary: seq-len = 315407 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227321-231811 bp Zoom in on locus 1 x7 x4 x5 CRISPR array Location: 227321-227748 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 227321-227748 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 229611-229836 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 229611-229836 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 231520-231811 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 231520-231811 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 227321-227748 bp]: array | spacers
           [Locus range 229611-229836 bp]: array | spacers
           [Locus range 231520-231811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VING01000001.1 Clostridioides difficile strain Gcol.A27 .cdiff_col_A27.1, whole genome shotgun sequence

⇒Summary: seq-len = 822098 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257178-268380 bp 2 Locus 2: 490609-490702 bp Zoom in on locus 1 x26 Zoom in on locus 2 x2 CRISPR array Location: 257178-258842 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 257178-258842 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 259026-259292 bp Gene: cd09722:cas1 Type: universal Location: 259295-260275 bp Gene: pfam01930:cas4 Type: Type-I Location: 260278-260796 bp Gene: COG1203:cas3 Type: Type-I Location: 260844-263165 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 263176-263877 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 263879-264793 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 264795-266645 bp Gene: pfam01881:cas6 Type: other Location: 266651-267445 bp Gene: pfam13280:WYL Type: other Location: 267466-268380 bp CRISPR array Location: 490609-490702 bp Num of repeats: 2 Spacers: s26-s26 CRISPR array Location: 490609-490702 bp Num of repeats: 2 Spacers: s26-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257178-258842 bp]: array | spacers
           [Locus range 490609-490702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VING01000003.1 Clostridioides difficile strain Gcol.A27 .cdiff_col_A27.3, whole genome shotgun sequence

⇒Summary: seq-len = 418907 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182024-182780 bp 2 Locus 2: 293072-293630 bp Zoom in on locus 1 x12 Zoom in on locus 2 x9 CRISPR array Location: 182024-182780 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 182024-182780 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 293072-293630 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 293072-293630 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182024-182780 bp]: array | spacers
           [Locus range 293072-293630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VING01000007.1 Clostridioides difficile strain Gcol.A27 .cdiff_col_A27.7, whole genome shotgun sequence

⇒Summary: seq-len = 234263 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228025-229174 bp Zoom in on locus 1 x18 CRISPR array Location: 228025-229174 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 228025-229174 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 228025-229174 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)