CRISPRone

CRISPRone report for GCA_007114995.1_ASM711499v1

♦ Seq 1: VINH01000006.1 Clostridioides difficile strain Gcol.A24 .cdiff_col_A24.6, whole genome shotgun sequence

⇒Summary: seq-len = 315407 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83597-88088 bp Zoom in on locus 1 x5 x4 x7 CRISPR array Location: 83597-83889 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 83597-83889 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 85572-85798 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 85572-85798 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 87660-88088 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 87660-88088 bp Num of repeats: 7 Spacers: s8-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83597-83889 bp]: array | spacers
           [Locus range 85572-85798 bp]: array | spacers
           [Locus range 87660-88088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VINH01000005.1 Clostridioides difficile strain Gcol.A24 .cdiff_col_A24.5, whole genome shotgun sequence

⇒Summary: seq-len = 374280 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83006-83622 bp 2 Locus 2: 246894-255215 bp 3 Locus 3: 328498-328855 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 83006-83622 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 83006-83622 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 246894-249302 bp Gene: cd09693:cas5 Type: Type-I Location: 249329-250126 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 250142-251158 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 251178-252653 bp Gene: pfam01881:cas6 Type: other Location: 252658-253395 bp Gene: unk Type: unknown Location: 253496-253672 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 254106-255215 bp CRISPR array Location: 328498-328855 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 328498-328855 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 83006-83622 bp]: array | spacers
           [Locus range 328498-328855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VINH01000012.1 Clostridioides difficile strain Gcol.A24 .cdiff_col_A24.12, whole genome shotgun sequence

⇒Summary: seq-len = 70394 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5054-6204 bp Zoom in on locus 1 x18 CRISPR array Location: 5054-6204 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5054-6204 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5054-6204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VINH01000001.1 Clostridioides difficile strain Gcol.A24 .cdiff_col_A24.1, whole genome shotgun sequence

⇒Summary: seq-len = 762383 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275758-275852 bp 2 Locus 2: 498107-509283 bp Zoom in on locus 1 x2 Zoom in on locus 2 x26 CRISPR array Location: 275758-275852 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 275758-275852 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 498107-498994 bp Gene: pfam01881:cas6 Type: other Location: 499072-499809 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 499815-501665 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 501667-502581 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 502583-503284 bp Gene: COG1203:cas3 Type: Type-I Location: 503295-505616 bp Gene: pfam01930:cas4 Type: Type-I Location: 505631-506182 bp Gene: cd09722:cas1 Type: universal Location: 506185-507165 bp Gene: cd09725:cas2 Type: universal Location: 507168-507434 bp CRISPR array Location: 507618-509283 bp Num of repeats: 26 Spacers: s2-s26 CRISPR array Location: 507618-509283 bp Num of repeats: 26 Spacers: s2-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275758-275852 bp]: array | spacers
           [Locus range 507618-509283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VINH01000004.1 Clostridioides difficile strain Gcol.A24 .cdiff_col_A24.4, whole genome shotgun sequence

⇒Summary: seq-len = 419144 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125276-125835 bp 2 Locus 2: 236126-236883 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 CRISPR array Location: 125276-125835 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 125276-125835 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 236126-236883 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 236126-236883 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125276-125835 bp]: array | spacers
           [Locus range 236126-236883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VINH01000003.1 Clostridioides difficile strain Gcol.A24 .cdiff_col_A24.3, whole genome shotgun sequence

⇒Summary: seq-len = 436076 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291709-291870 bp Zoom in on locus 1 x3 CRISPR array Location: 291709-291870 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 291709-291870 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 291709-291870 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)