CRISPRone

CRISPRone report for GCA_007280445.1_ASM728044v1

♦ Seq 1: VKLA01000046.1 Pseudomonas aeruginosa strain NSC1664 NSC1664_S1_Q15_contig_46, whole genome shotgun sequence

⇒Summary: seq-len = 74658 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29022-39931 bp Zoom in on locus 1 x23 x17 CRISPR array Location: 29022-30370 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 29022-30370 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 30621-31595 bp Gene: COG1203:cas3 Type: Type-I Location: 31592-34822 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34880-36184 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36171-37154 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37165-38193 bp Gene: cd09739:cas6f Type: other Location: 38197-38760 bp CRISPR array Location: 38944-39931 bp Num of repeats: 17 Spacers: s23-s38 CRISPR array Location: 38944-39931 bp Num of repeats: 17 Spacers: s23-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29022-30370 bp]: array | spacers
           [Locus range 38944-39931 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VKLA01000141.1 Pseudomonas aeruginosa strain NSC1664 NSC1664_S1_Q15_contig_141, whole genome shotgun sequence

⇒Summary: seq-len = 49727 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35585-45446 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 35585-37951 bp Gene: unk Type: unknown Location: 38344-38991 bp Gene: unk Type: unknown Location: 39057-39425 bp Gene: pfam13280:WYL Type: other Location: 39475-40350 bp Gene: unk Type: unknown Location: 40365-40898 bp Gene: unk Type: unknown Location: 41157-41387 bp Gene: unk Type: unknown Location: 41456-41695 bp Gene: pfam13280:WYL Type: other Location: 42659-43675 bp Gene: mkCas0115:csx3 Type: other Location: 43734-45446 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VKLA01000028.1 Pseudomonas aeruginosa strain NSC1664 NSC1664_S1_Q15_contig_28, whole genome shotgun sequence

⇒Summary: seq-len = 378404 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 329050-329498 bp Zoom in on locus 1 x8 CRISPR array Location: 329050-329498 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 329050-329498 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 329050-329498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)