CRISPRone

CRISPRone report for GCA_007896575.1_ASM789657v1

♦ Seq 1: VOHV01000012.1 Bacteroides fragilis strain AD135F_1B NODE_12_length_149158_cov_61.017218, whole genome shotgun sequence

⇒Summary: seq-len = 149158 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22-1680 bp Zoom in on locus 1 x24 CRISPR array Location: 22-1680 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 22-1680 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22-1680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VOHV01000003.1 Bacteroides fragilis strain AD135F_1B NODE_3_length_666975_cov_69.538294, whole genome shotgun sequence

⇒Summary: seq-len = 666975 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 542910-546523 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 542910-543809 bp Gene: unk Type: unknown Location: 543806-545071 bp Gene: unk Type: unknown Location: 545079-545852 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 545855-546523 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VOHV01000006.1 Bacteroides fragilis strain AD135F_1B NODE_6_length_405264_cov_74.770808, whole genome shotgun sequence

⇒Summary: seq-len = 405264 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1122-9534 bp Zoom in on locus 1 x21 CRISPR array Location: 1122-2699 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1122-2699 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2808-3140 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3144-4076 bp Gene: unk Type: unknown Location: 4196-4504 bp Gene: unk Type: unknown Location: 4571-5095 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5111-9421 bp antiRepeat Location: 9489-9534 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1122-2699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VOHV01000018.1 Bacteroides fragilis strain AD135F_1B NODE_18_length_42195_cov_59.178687, whole genome shotgun sequence

⇒Summary: seq-len = 42195 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28238-42176 bp Zoom in on locus 1 x4 Gene: cls000004:cas6 Type: other Location: 28238-28969 bp Gene: unk Type: unknown Location: 28987-29613 bp Gene: unk Type: unknown Location: 29589-30368 bp Gene: cash17:cash17 Type: Type- Location: 30413-31840 bp Gene: unk Type: unknown Location: 31837-32316 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 32330-33739 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33744-35546 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35539-36687 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36700-37539 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37552-37962 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37959-38909 bp Gene: cd09634:cas1 Type: universal Location: 38929-41199 bp Gene: cd09725:cas2 Type: universal Location: 41193-41483 bp CRISPR array Location: 41931-42176 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 41931-42176 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41931-42176 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)