CRISPRone

CRISPRone report for GCA_007896605.1_ASM789660v1

♦ Seq 1: VOHT01000003.1 Bacteroides fragilis strain AD135F_3B NODE_3_length_666976_cov_76.129344, whole genome shotgun sequence

⇒Summary: seq-len = 666976 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 542910-546523 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 542910-543809 bp Gene: unk Type: unknown Location: 543806-545071 bp Gene: unk Type: unknown Location: 545079-545852 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 545855-546523 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VOHT01000006.1 Bacteroides fragilis strain AD135F_3B NODE_6_length_405264_cov_81.898338, whole genome shotgun sequence

⇒Summary: seq-len = 405264 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1122-9534 bp Zoom in on locus 1 x21 CRISPR array Location: 1122-2699 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1122-2699 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2808-3140 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3144-4076 bp Gene: unk Type: unknown Location: 4196-4504 bp Gene: unk Type: unknown Location: 4571-5095 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5111-9421 bp antiRepeat Location: 9489-9534 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1122-2699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VOHT01000011.1 Bacteroides fragilis strain AD135F_3B NODE_11_length_193641_cov_65.929426, whole genome shotgun sequence

⇒Summary: seq-len = 193641 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30665-46163 bp Zoom in on locus 1 x27 Gene: cls000004:cas6 Type: other Location: 30665-31333 bp Gene: unk Type: unknown Location: 31351-31977 bp Gene: unk Type: unknown Location: 31953-32732 bp Gene: cash17:cash17 Type: Type- Location: 32777-34204 bp Gene: unk Type: unknown Location: 34201-34680 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 34694-36103 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 36108-37910 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 37903-39051 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 39064-39903 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 39916-40326 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 40329-41273 bp Gene: cd09634:cas1 Type: universal Location: 41293-43563 bp Gene: cd09725:cas2 Type: universal Location: 43557-43847 bp CRISPR array Location: 44295-46163 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 44295-46163 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44295-46163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)