CRISPRone

CRISPRone report for GCA_007896675.1_ASM789667v1

♦ Seq 1: VOIJ01000001.1 Bacteroides fragilis strain AD126T_2B NODE_1_length_754196_cov_54.970794, whole genome shotgun sequence

⇒Summary: seq-len = 754196 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 438586-453718 bp Zoom in on locus 1 x22 CRISPR array Location: 438586-440090 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 438586-440090 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 440538-440828 bp Gene: cd09634:cas1 Type: universal Location: 440822-443092 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 443112-444056 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 444059-444469 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 444482-445321 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 445341-446480 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 446473-448275 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 448280-449689 bp Gene: unk Type: unknown Location: 449703-450182 bp Gene: cash17:cash17 Type: Type- Location: 450179-451606 bp Gene: unk Type: unknown Location: 451651-452430 bp Gene: unk Type: unknown Location: 452406-453032 bp Gene: cls000004:cas6 Type: other Location: 453050-453718 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 438586-440090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VOIJ01000005.1 Bacteroides fragilis strain AD126T_2B NODE_5_length_581360_cov_65.333030, whole genome shotgun sequence

⇒Summary: seq-len = 581360 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 386928-390541 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 386928-387596 bp Gene: unk Type: unknown Location: 387599-388372 bp Gene: unk Type: unknown Location: 388380-389645 bp Gene: pfam13280:WYL Type: other Location: 389642-390541 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VOIJ01000008.1 Bacteroides fragilis strain AD126T_2B NODE_8_length_223458_cov_73.813514, whole genome shotgun sequence

⇒Summary: seq-len = 223458 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 949-9363 bp Zoom in on locus 1 x21 CRISPR array Location: 949-2528 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 949-2528 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2637-2969 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2973-3905 bp Gene: unk Type: unknown Location: 4025-4333 bp Gene: unk Type: unknown Location: 4400-4924 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4940-9250 bp antiRepeat Location: 9318-9363 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 949-2528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)