CRISPRone

CRISPRone report for GCA_007896685.1_ASM789668v1

♦ Seq 1: VOHZ01000003.1 Bacteroides fragilis strain AD126T_1B NODE_3_length_584614_cov_44.591127, whole genome shotgun sequence

⇒Summary: seq-len = 584614 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300416-315612 bp Zoom in on locus 1 x22 Gene: cls000004:cas6 Type: other Location: 300416-301147 bp Gene: unk Type: unknown Location: 301165-301791 bp Gene: unk Type: unknown Location: 301767-302546 bp Gene: cash17:cash17 Type: Type- Location: 302591-304018 bp Gene: unk Type: unknown Location: 304015-304494 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 304508-305917 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 305922-307724 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 307717-308856 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 308876-309715 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 309728-310138 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 310135-311085 bp Gene: cd09634:cas1 Type: universal Location: 311105-313375 bp Gene: cd09725:cas2 Type: universal Location: 313369-313659 bp CRISPR array Location: 314107-315612 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 314107-315612 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 314107-315612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VOHZ01000004.1 Bacteroides fragilis strain AD126T_1B NODE_4_length_581360_cov_52.204544, whole genome shotgun sequence

⇒Summary: seq-len = 581360 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 386928-390541 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 386928-387596 bp Gene: unk Type: unknown Location: 387599-388372 bp Gene: unk Type: unknown Location: 388380-389645 bp Gene: pfam13280:WYL Type: other Location: 389642-390541 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VOHZ01000008.1 Bacteroides fragilis strain AD126T_1B NODE_8_length_223465_cov_60.789351, whole genome shotgun sequence

⇒Summary: seq-len = 223465 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 214103-222518 bp Zoom in on locus 1 x21 antiRepeat Location: 214103-214148 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 214216-218526 bp Gene: unk Type: unknown Location: 218542-219066 bp Gene: unk Type: unknown Location: 219133-219441 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 219561-220493 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 220497-220829 bp CRISPR array Location: 220938-222518 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 220938-222518 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 220938-222518 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)