CRISPRone

CRISPRone report for GCA_008086695.1_ASM808669v1

♦ Seq 1: SRKB01000010.1 Bacteroides fragilis strain 143 Contig0010, whole genome shotgun sequence

⇒Summary: seq-len = 457760 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 407-9163 bp Zoom in on locus 1 x27 CRISPR array Location: 407-2441 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 407-2441 bp Num of repeats: 27 Spacers: s1-s26 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2550-2882 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2886-3818 bp Gene: unk Type: unknown Location: 3938-4246 bp Gene: unk Type: unknown Location: 4313-4837 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4853-9163 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 407-2441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SRKB01000002.1 Bacteroides fragilis strain 143 Contig0002, whole genome shotgun sequence

⇒Summary: seq-len = 1260093 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26336-28720 bp 2 Locus 2: 578576-588705 bp Zoom in on locus 1 x10 Zoom in on locus 2 Gene: cd09652:cas6 Type: other Location: 26336-27007 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 27019-27399 bp Gene: cd09722:cas1 Type: universal Location: 27392-27631 bp Gene: cd09725:cas2 Type: universal Location: 27634-27897 bp CRISPR array Location: 28110-28720 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 28110-28720 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09710:cas3 Type: Subtype-I-D Location: 578576-584716 bp Gene: pfam13280:WYL Type: other Location: 584755-585765 bp Gene: unk Type: unknown Location: 586531-586707 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 587044-588705 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28110-28720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SRKB01000005.1 Bacteroides fragilis strain 143 Contig0005, whole genome shotgun sequence

⇒Summary: seq-len = 277188 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91304-94914 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 91304-92203 bp Gene: unk Type: unknown Location: 92200-93465 bp Gene: unk Type: unknown Location: 93473-94243 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 94246-94914 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)