CRISPRone

CRISPRone report for GCA_008180895.1_ASM818089v1

♦ Seq 1: VTBD01000007.1 Pseudomonas aeruginosa strain CCUG 59347 contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 384916 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 278321-286582 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 278321-280687 bp Gene: unk Type: unknown Location: 281080-281727 bp Gene: unk Type: unknown Location: 281793-282080 bp Gene: COG2378:WYL Type: other Location: 282211-283053 bp Gene: pfam13280:WYL Type: other Location: 283795-284811 bp Gene: mkCas0115:csx3 Type: other Location: 284972-286582 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VTBD01000006.1 Pseudomonas aeruginosa strain CCUG 59347 contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 464165 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182412-193930 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 182412-184001 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 182412-184001 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09718:cas1 Type: universal Location: 184262-185236 bp Gene: COG1203:cas3 Type: Type-I Location: 185233-188463 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 188521-189825 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 189812-190795 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 190806-191834 bp Gene: cd09739:cas6f Type: other Location: 191838-192401 bp CRISPR array Location: 192586-193930 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 192586-193930 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 182412-184001 bp]: array | spacers
           [Locus range 192586-193930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VTBD01000001.1 Pseudomonas aeruginosa strain CCUG 59347 contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 869554 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424393-425320 bp Zoom in on locus 1 x16 CRISPR array Location: 424393-425320 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 424393-425320 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424393-425320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)