CRISPRone

CRISPRone report for GCA_008245165.1_ASM824516v1

♦ Seq 1: CP042267.1 Clostridioides difficile strain Mta-79 chromosome, complete genome

⇒Summary: seq-len = 4123685 bp; # of CRISPR array = 10; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1267555-1267973 bp 2 Locus 2: 1520969-1521392 bp 3 Locus 3: 1631749-1632373 bp 4 Locus 4: 1722152-1722313 bp 5 Locus 5: 1860622-1862027 bp 6 Locus 6: 2178607-2178965 bp 7 Locus 7: 2253838-2254921 bp 8 Locus 8: 2556226-2556980 bp 9 Locus 9: 2720357-2728666 bp 10 Locus 10: 2801945-2802038 bp 11 Locus 11: 3301058-3311282 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x10 Zoom in on locus 4 x3 Zoom in on locus 5 x22 Zoom in on locus 6 x6 Zoom in on locus 7 x17 Zoom in on locus 8 x12 Zoom in on locus 9 Zoom in on locus 10 x2 Zoom in on locus 11 x11 CRISPR array Location: 1267555-1267973 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1267555-1267973 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1520969-1521392 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 1520969-1521392 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 1631749-1632373 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 1631749-1632373 bp Num of repeats: 10 Spacers: s13-s21 CRISPR array Location: 1722152-1722313 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 1722152-1722313 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 1860622-1862027 bp Num of repeats: 22 Spacers: s24-s44 CRISPR array Location: 1860622-1862027 bp Num of repeats: 22 Spacers: s24-s44 CRISPR array Location: 2178607-2178965 bp Num of repeats: 6 Spacers: s45-s49 CRISPR array Location: 2178607-2178965 bp Num of repeats: 6 Spacers: s45-s49 CRISPR array Location: 2253838-2254921 bp Num of repeats: 17 Spacers: s50-s65 CRISPR array Location: 2253838-2254921 bp Num of repeats: 17 Spacers: s50-s65 CRISPR array Location: 2556226-2556980 bp Num of repeats: 12 Spacers: s66-s76 CRISPR array Location: 2556226-2556980 bp Num of repeats: 12 Spacers: s66-s76 Gene: cd09641:cas3HD Type: Type-I Location: 2720357-2722765 bp Gene: cd09693:cas5 Type: Type-I Location: 2722792-2723589 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2723605-2724618 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2724638-2726104 bp Gene: pfam01881:cas6 Type: other Location: 2726109-2726846 bp Gene: unk Type: unknown Location: 2726947-2727123 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2727557-2728666 bp CRISPR array Location: 2801945-2802038 bp Num of repeats: 2 Spacers: s77-s77 CRISPR array Location: 2801945-2802038 bp Num of repeats: 2 Spacers: s77-s77 CRISPR array Location: 3301058-3301744 bp Num of repeats: 11 Spacers: s78-s87 CRISPR array Location: 3301058-3301744 bp Num of repeats: 11 Spacers: s78-s87 Gene: cd09725:cas2 Type: universal Location: 3301928-3302194 bp Gene: cd09722:cas1 Type: universal Location: 3302197-3303177 bp Gene: pfam01930:cas4 Type: Type-I Location: 3303180-3303698 bp Gene: COG1203:cas3 Type: Type-I Location: 3303746-3306067 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3306078-3306779 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3306781-3307695 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3307697-3309547 bp Gene: pfam01881:cas6 Type: other Location: 3309553-3310347 bp Gene: pfam13280:WYL Type: other Location: 3310368-3311282 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1267555-1267973 bp]: array | spacers
           [Locus range 1520969-1521392 bp]: array | spacers
           [Locus range 1631749-1632373 bp]: array | spacers
           [Locus range 1722152-1722313 bp]: array | spacers
           [Locus range 1860622-1862027 bp]: array | spacers
           [Locus range 2178607-2178965 bp]: array | spacers
           [Locus range 2253838-2254921 bp]: array | spacers
           [Locus range 2556226-2556980 bp]: array | spacers
           [Locus range 2801945-2802038 bp]: array | spacers
           [Locus range 3301058-3301744 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)