CRISPRone

CRISPRone report for GCA_008386005.1_ASM838600v1

♦ Seq 1: VUNU01000014.1 Clostridioides difficile strain ATCC BAA-1801 Clostridium_difficile_BA1801_14, whole genome shotgun sequence

⇒Summary: seq-len = 159975 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112457-114244 bp Zoom in on locus 1 x9 x17 CRISPR array Location: 112457-113014 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 112457-113014 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 113164-114244 bp Num of repeats: 17 Spacers: s9-s24 CRISPR array Location: 113164-114244 bp Num of repeats: 17 Spacers: s9-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112457-113014 bp]: array | spacers
           [Locus range 113164-114244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VUNU01000007.1 Clostridioides difficile strain ATCC BAA-1801 Clostridium_difficile_BA1801_7, whole genome shotgun sequence

⇒Summary: seq-len = 1026944 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196808-197033 bp 2 Locus 2: 538210-538436 bp 3 Locus 3: 704168-712033 bp 4 Locus 4: 786254-786810 bp Zoom in on locus 1 x4 Zoom in on locus 2 x4 Zoom in on locus 3 Zoom in on locus 4 x9 CRISPR array Location: 196808-197033 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 196808-197033 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 538210-538436 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 538210-538436 bp Num of repeats: 4 Spacers: s4-s6 Gene: cd09641:cas3HD Type: Type-I Location: 704168-706576 bp Gene: cd09693:cas5 Type: Type-I Location: 706603-707400 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 707416-708429 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 708449-709924 bp Gene: pfam01881:cas6 Type: other Location: 709929-710666 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 710924-712033 bp CRISPR array Location: 786254-786810 bp Num of repeats: 9 Spacers: s7-s14 CRISPR array Location: 786254-786810 bp Num of repeats: 9 Spacers: s7-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 196808-197033 bp]: array | spacers
           [Locus range 538210-538436 bp]: array | spacers
           [Locus range 786254-786810 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VUNU01000013.1 Clostridioides difficile strain ATCC BAA-1801 Clostridium_difficile_BA1801_13, whole genome shotgun sequence

⇒Summary: seq-len = 122664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107088-107182 bp Zoom in on locus 1 x2 CRISPR array Location: 107088-107182 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 107088-107182 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107088-107182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VUNU01000005.1 Clostridioides difficile strain ATCC BAA-1801 Clostridium_difficile_BA1801_5, whole genome shotgun sequence

⇒Summary: seq-len = 641260 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38199-40042 bp 2 Locus 2: 129566-130324 bp 3 Locus 3: 246659-247080 bp 4 Locus 4: 450606-451032 bp Zoom in on locus 1 x11 x9 Zoom in on locus 2 x12 Zoom in on locus 3 x7 Zoom in on locus 4 x7 CRISPR array Location: 38199-38885 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 38199-38885 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 39488-40042 bp Num of repeats: 9 Spacers: s11-s18 CRISPR array Location: 39488-40042 bp Num of repeats: 9 Spacers: s11-s18 CRISPR array Location: 129566-130324 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 129566-130324 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 246659-247080 bp Num of repeats: 7 Spacers: s30-s35 CRISPR array Location: 246659-247080 bp Num of repeats: 7 Spacers: s30-s35 CRISPR array Location: 450606-451032 bp Num of repeats: 7 Spacers: s36-s41 CRISPR array Location: 450606-451032 bp Num of repeats: 7 Spacers: s36-s41 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38199-38885 bp]: array | spacers
           [Locus range 39488-40042 bp]: array | spacers
           [Locus range 129566-130324 bp]: array | spacers
           [Locus range 246659-247080 bp]: array | spacers
           [Locus range 450606-451032 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)