CRISPRone

CRISPRone report for GCA_008579085.1_ASM857908v1

♦ Seq 1: BEHB01000013.1 Clostridioides difficile DNA, contig: sequence13, strain: TNHP173, whole genome shotgun sequence

⇒Summary: seq-len = 141372 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61786-73439 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61786-62076 bp Gene: cd09722:cas1 Type: universal Location: 62287-63294 bp Gene: pfam01930:cas4 Type: Type-I Location: 63320-63814 bp CRISPR array Location: 63899-66497 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63899-66497 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64522-64650 bp Gene: cd09641:cas3HD Type: Type-I Location: 66687-69245 bp Gene: cd09693:cas5 Type: Type-I Location: 69269-70009 bp Gene: pfam05107:cas7b Type: Type-I Location: 70011-71000 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70993-72732 bp Gene: cd09652:cas6 Type: other Location: 72744-73439 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63899-66497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BEHB01000001.1 Clostridioides difficile DNA, contig: sequence01, strain: TNHP173, whole genome shotgun sequence

⇒Summary: seq-len = 298037 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193230-193857 bp Zoom in on locus 1 x10 CRISPR array Location: 193230-193857 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 193230-193857 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 193230-193857 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BEHB01000007.1 Clostridioides difficile DNA, contig: sequence07, strain: TNHP173, whole genome shotgun sequence

⇒Summary: seq-len = 169226 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54694-67004 bp 2 Locus 2: 122546-123359 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 54694-57558 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 54694-57558 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 64960-66615 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 66627-67004 bp CRISPR array Location: 122546-123359 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 122546-123359 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 54694-57558 bp]: array | spacers
           [Locus range 122546-123359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BEHB01000004.1 Clostridioides difficile DNA, contig: sequence04, strain: TNHP173, whole genome shotgun sequence

⇒Summary: seq-len = 259077 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97983-108936 bp 2 Locus 2: 161539-169866 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97983-98489 bp Gene: unk Type: unknown Location: 98648-99316 bp Gene: unk Type: unknown Location: 99729-100235 bp Gene: cd06127:DEDDh Type: Type-I Location: 100599-101636 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108451-108936 bp Gene: cd09641:cas3HD Type: Type-I Location: 161539-163947 bp Gene: cd09693:cas5 Type: Type-I Location: 163974-164771 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164787-165800 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165819-167285 bp Gene: pfam01881:cas6 Type: other Location: 167290-168027 bp Gene: unk Type: unknown Location: 168128-168304 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168757-169866 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BEHB01000021.1 Clostridioides difficile DNA, contig: sequence21, strain: TNHP173, whole genome shotgun sequence

⇒Summary: seq-len = 76983 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2089-3238 bp Zoom in on locus 1 x18 CRISPR array Location: 2089-3238 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2089-3238 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2089-3238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BEHB01000011.1 Clostridioides difficile DNA, contig: sequence11, strain: TNHP173, whole genome shotgun sequence

⇒Summary: seq-len = 148240 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126054-137752 bp Zoom in on locus 1 x33 CRISPR array Location: 126054-128175 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 126054-128175 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128359-128625 bp Gene: cd09722:cas1 Type: universal Location: 128628-129608 bp Gene: pfam01930:cas4 Type: Type-I Location: 129611-130129 bp Gene: COG1203:cas3 Type: Type-I Location: 130177-132498 bp Gene: cd09693:cas5 Type: Type-I Location: 132509-133210 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 133212-134126 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 134128-135978 bp Gene: pfam01881:cas6 Type: other Location: 135984-136721 bp Gene: pfam13280:WYL Type: other Location: 136799-137752 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 126054-128175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)