CRISPRone

CRISPRone report for GCA_008629785.1_ASM862978v1

♦ Seq 1: VWQC01000019.1 Pseudomonas aeruginosa strain L34 L34_L1.R1.clean_(paired)_contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 49395 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 220-10839 bp Zoom in on locus 1 x17 x18 CRISPR array Location: 220-1208 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 220-1208 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1469-2443 bp Gene: COG1203:cas3 Type: Type-I Location: 2440-5670 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5728-7032 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7019-8002 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8013-9041 bp Gene: cd09739:cas6f Type: other Location: 9045-9608 bp CRISPR array Location: 9791-10839 bp Num of repeats: 18 Spacers: s17-s33 CRISPR array Location: 9791-10839 bp Num of repeats: 18 Spacers: s17-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 220-1208 bp]: array | spacers
           [Locus range 9791-10839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VWQC01000016.1 Pseudomonas aeruginosa strain L34 L34_L1.R1.clean_(paired)_contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 9206 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1945-8210 bp Zoom in on locus 1 Gene: pfam01930:cas4 Type: Type-I Location: 1945-2577 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 2596-3465 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 3462-5255 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 5252-5926 bp Gene: cd09641:cas3HD Type: Type-I Location: 5976-8210 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VWQC01000014.1 Pseudomonas aeruginosa strain L34 L34_L1.R1.clean_(paired)_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 227658 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 220-668 bp Zoom in on locus 1 x8 CRISPR array Location: 220-668 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 220-668 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 220-668 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)