CRISPRone

CRISPRone report for GCA_008629905.1_ASM862990v1

♦ Seq 1: VWQJ01000022.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_22, whole genome shotgun sequence

⇒Summary: seq-len = 166792 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166632-166783 bp Zoom in on locus 1 x3 CRISPR array Location: 166632-166783 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 166632-166783 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 166632-166783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VWQJ01000018.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 169742 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34-11706 bp Zoom in on locus 1 x12 x29 CRISPR array Location: 34-734 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 34-734 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 1508-4189 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4192-5760 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5757-6287 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 6297-7439 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 7441-8103 bp Gene: pfam08798:cas6e Type: other Location: 8078-8689 bp Gene: cd09719:cas1 Type: universal Location: 8716-9606 bp Gene: pfam09707:cas2 Type: universal Location: 9603-9902 bp CRISPR array Location: 9967-11706 bp Num of repeats: 29 Spacers: s12-s39 CRISPR array Location: 9967-11706 bp Num of repeats: 29 Spacers: s12-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34-734 bp]: array | spacers
           [Locus range 9967-11706 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)