CRISPRone

CRISPRone report for GCA_008632685.1_ASM863268v1

♦ Seq 1: VWQK01000014.1 Pseudomonas aeruginosa strain L25 L25_L1.R1.clean_(paired)_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 505131 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158039-170076 bp Zoom in on locus 1 x29 x18 CRISPR array Location: 158039-159777 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 158039-159777 bp Num of repeats: 29 Spacers: s1-s28 Gene: pfam09707:cas2 Type: universal Location: 159842-160141 bp Gene: cd09719:cas1 Type: universal Location: 160138-161028 bp Gene: pfam08798:cas6e Type: other Location: 161055-161594 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 161641-162303 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 162305-163447 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 163457-163987 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 163984-165552 bp Gene: cd09641:cas3HD Type: Type-I Location: 165555-168236 bp CRISPR array Location: 169011-170076 bp Num of repeats: 18 Spacers: s29-s45 CRISPR array Location: 169011-170076 bp Num of repeats: 18 Spacers: s29-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 158039-159777 bp]: array | spacers
           [Locus range 169011-170076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)