CRISPRone

CRISPRone report for GCA_008802485.1_ASM880248v1

♦ Seq 1: VZIQ01002249.1 Pseudomonas aeruginosa strain KCJ3K66 NODE_2249_length_479_cov_0.696023, whole genome shotgun sequence

⇒Summary: seq-len = 479 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241-449 bp Zoom in on locus 1 x4 CRISPR array Location: 241-449 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 241-449 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241-449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VZIQ01002148.1 Pseudomonas aeruginosa strain KCJ3K66 NODE_2148_length_563_cov_2.360092, whole genome shotgun sequence

⇒Summary: seq-len = 563 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13-581 bp Zoom in on locus 1 x10 CRISPR array Location: 13-581 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 13-581 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13-581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VZIQ01001177.1 Pseudomonas aeruginosa strain KCJ3K66 NODE_1177_length_1907_cov_1.896067, whole genome shotgun sequence

⇒Summary: seq-len = 1907 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12-579 bp Zoom in on locus 1 x10 CRISPR array Location: 12-579 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 12-579 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12-579 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VZIQ01000077.1 Pseudomonas aeruginosa strain KCJ3K66 NODE_77_length_8280_cov_2.305900, whole genome shotgun sequence

⇒Summary: seq-len = 8280 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140-8279 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 140-1114 bp Gene: COG1203:cas3 Type: Type-I Location: 1111-4341 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4399-5703 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5690-6673 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6684-7712 bp Gene: cd09739:cas6f Type: other Location: 7716-8279 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)