CRISPRone

CRISPRone report for GCA_008802495.1_ASM880249v1

♦ Seq 1: VZIO01000099.1 Pseudomonas aeruginosa strain KCJ3K42 NODE_99_length_10146_cov_8.585288, whole genome shotgun sequence

⇒Summary: seq-len = 10146 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1236-10007 bp Zoom in on locus 1 x8 CRISPR array Location: 1236-1684 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1236-1684 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 1868-2431 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2435-3463 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3474-4457 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4444-5748 bp Gene: COG1203:cas3 Type: Type-I Location: 5806-9036 bp Gene: cd09718:cas1 Type: universal Location: 9033-10007 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1236-1684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VZIO01000002.1 Pseudomonas aeruginosa strain KCJ3K42 NODE_2_length_274913_cov_6.618349, whole genome shotgun sequence

⇒Summary: seq-len = 274913 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192415-192924 bp Zoom in on locus 1 x9 CRISPR array Location: 192415-192924 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 192415-192924 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192415-192924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VZIO01000131.1 Pseudomonas aeruginosa strain KCJ3K42 NODE_131_length_1364_cov_12.079224, whole genome shotgun sequence

⇒Summary: seq-len = 1364 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123-1291 bp Zoom in on locus 1 x20 CRISPR array Location: 123-1291 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 123-1291 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123-1291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)