CRISPRone

CRISPRone report for GCA_008802575.1_ASM880257v1

♦ Seq 1: VZIR01000015.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_15_length_63421_cov_4.030603, whole genome shotgun sequence

⇒Summary: seq-len = 63421 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54304-54932 bp Zoom in on locus 1 x11 CRISPR array Location: 54304-54932 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 54304-54932 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54304-54932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VZIR01000072.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_72_length_29440_cov_3.812302, whole genome shotgun sequence

⇒Summary: seq-len = 29440 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11970-14172 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 11970-12377 bp Gene: unk Type: unknown Location: 12405-13091 bp Gene: COG2378:WYL Type: other Location: 13201-14172 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VZIR01000022.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_22_length_49523_cov_7.785813, whole genome shotgun sequence

⇒Summary: seq-len = 49523 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13730-18101 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 13730-14572 bp Gene: unk Type: unknown Location: 14850-15071 bp Gene: pfam13280:WYL Type: other Location: 15314-16330 bp Gene: mkCas0115:csx3 Type: other Location: 16389-18101 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VZIR01000052.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_52_length_34491_cov_5.786841, whole genome shotgun sequence

⇒Summary: seq-len = 34491 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13163-25756 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 13163-13468 bp Gene: unk Type: unknown Location: 13782-14204 bp Gene: cd09641:cas3HD Type: Type-I Location: 14396-16192 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 25454-25756 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: VZIR01000042.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_42_length_38470_cov_3.534543, whole genome shotgun sequence

⇒Summary: seq-len = 38470 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2647 bp Zoom in on locus 1 x9 Gene: cd09736:cas5f Type: Subtype-I-F Location: 1-360 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 371-1399 bp Gene: cd09739:cas6f Type: other Location: 1403-1966 bp CRISPR array Location: 2140-2647 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2140-2647 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2140-2647 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: VZIR01000002.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_2_length_95255_cov_4.956311, whole genome shotgun sequence

⇒Summary: seq-len = 95255 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70654-81239 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 70654-71523 bp Gene: pfam00078:RT Type: other Location: 76432-77700 bp Gene: unk Type: unknown Location: 77850-78248 bp Gene: unk Type: unknown Location: 78432-78611 bp Gene: cls000170:cas4 Type: Type-I Location: 79695-81239 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: VZIR01000146.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_146_length_15030_cov_3.967926, whole genome shotgun sequence

⇒Summary: seq-len = 15030 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-6977 bp Zoom in on locus 1 x10 Gene: pfam09614:cas5f Type: Subtype-I-F Location: 3-572 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 559-1863 bp Gene: COG1203:cas3 Type: Type-I Location: 1921-5157 bp Gene: cd09718:cas1 Type: universal Location: 5154-6128 bp CRISPR array Location: 6409-6977 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 6409-6977 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6409-6977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)