CRISPRone

CRISPRone report for GCA_008802635.1_ASM880263v1

♦ Seq 1: VZIV01000023.1 Pseudomonas aeruginosa strain KCJ3K105 NODE_23_length_88542_cov_6.060227, whole genome shotgun sequence

⇒Summary: seq-len = 88542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20603-21411 bp Zoom in on locus 1 x14 CRISPR array Location: 20603-21411 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 20603-21411 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20603-21411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VZIV01000033.1 Pseudomonas aeruginosa strain KCJ3K105 NODE_33_length_65409_cov_5.294001, whole genome shotgun sequence

⇒Summary: seq-len = 65409 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54047-64821 bp Zoom in on locus 1 x15 x16 CRISPR array Location: 54047-54915 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 54047-54915 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 55098-55661 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55665-56693 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56704-57687 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57674-58981 bp Gene: COG1203:cas3 Type: Type-I Location: 59431-62661 bp Gene: cd09718:cas1 Type: universal Location: 62658-63632 bp CRISPR array Location: 63894-64821 bp Num of repeats: 16 Spacers: s15-s29 CRISPR array Location: 63894-64821 bp Num of repeats: 16 Spacers: s15-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 54047-54915 bp]: array | spacers
           [Locus range 63894-64821 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)