CRISPRone

CRISPRone report for GCA_008802705.1_ASM880270v1

♦ Seq 1: VZIY01000049.1 Pseudomonas aeruginosa strain KCJ3K296 NODE_49_length_47185_cov_6.323919, whole genome shotgun sequence

⇒Summary: seq-len = 47185 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36421-46798 bp Zoom in on locus 1 x4 x27 CRISPR array Location: 36421-36629 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 36421-36629 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09739:cas6f Type: other Location: 36812-37375 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37379-38407 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38418-39401 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39388-40692 bp Gene: COG1203:cas3 Type: Type-I Location: 40750-43980 bp Gene: cd09718:cas1 Type: universal Location: 43977-44951 bp CRISPR array Location: 45212-46798 bp Num of repeats: 27 Spacers: s4-s29 CRISPR array Location: 45212-46798 bp Num of repeats: 27 Spacers: s4-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36421-36629 bp]: array | spacers
           [Locus range 45212-46798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VZIY01000003.1 Pseudomonas aeruginosa strain KCJ3K296 NODE_3_length_208925_cov_7.253475, whole genome shotgun sequence

⇒Summary: seq-len = 208925 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15253-16542 bp Zoom in on locus 1 x22 CRISPR array Location: 15253-16542 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 15253-16542 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15253-16542 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)