CRISPRone

CRISPRone report for GCA_008843095.1_ASM884309v1

♦ Seq 1: WBZF01000003.1 Pseudomonas aeruginosa strain MUC-P4, whole genome shotgun sequence

⇒Summary: seq-len = 303827 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110401-121158 bp Zoom in on locus 1 x14 x12 CRISPR array Location: 110401-111223 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 110401-111223 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 111288-111587 bp Gene: cd09719:cas1 Type: universal Location: 111698-112474 bp Gene: pfam08798:cas6e Type: other Location: 112501-113040 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 113087-113749 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 113751-114893 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 114903-115433 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 115430-116998 bp Gene: cd09641:cas3HD Type: Type-I Location: 117001-119682 bp CRISPR array Location: 120458-121158 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 120458-121158 bp Num of repeats: 12 Spacers: s14-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110401-111223 bp]: array | spacers
           [Locus range 120458-121158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WBZF01000030.1 Pseudomonas aeruginosa strain MUC-P4, whole genome shotgun sequence

⇒Summary: seq-len = 63529 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262-1190 bp Zoom in on locus 1 x16 CRISPR array Location: 262-1190 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 262-1190 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 262-1190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WBZF01000040.1 Pseudomonas aeruginosa strain MUC-P4, whole genome shotgun sequence

⇒Summary: seq-len = 48161 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37407-47901 bp Zoom in on locus 1 x12 x21 CRISPR array Location: 37407-38090 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37407-38090 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 38273-38836 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38840-39868 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39879-40862 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40849-42153 bp Gene: COG1203:cas3 Type: Type-I Location: 42211-45441 bp Gene: cd09718:cas1 Type: universal Location: 45438-46412 bp CRISPR array Location: 46673-47901 bp Num of repeats: 21 Spacers: s12-s31 CRISPR array Location: 46673-47901 bp Num of repeats: 21 Spacers: s12-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37407-38090 bp]: array | spacers
           [Locus range 46673-47901 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)