CRISPRone

CRISPRone report for GCA_008868185.1_ASM886818v1

♦ Seq 1: WBMC01000056.1 Clostridioides difficile strain ATCC 43598 C_difficile_ATCC_43598_Contig_56, whole genome shotgun sequence

⇒Summary: seq-len = 22707 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3178-3597 bp Zoom in on locus 1 x7 CRISPR array Location: 3178-3597 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3178-3597 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3178-3597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WBMC01000135.1 Clostridioides difficile strain ATCC 43598 C_difficile_ATCC_43598_Contig_135, whole genome shotgun sequence

⇒Summary: seq-len = 9472 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8570-8926 bp Zoom in on locus 1 x6 CRISPR array Location: 8570-8926 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8570-8926 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8570-8926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WBMC01000183.1 Clostridioides difficile strain ATCC 43598 C_difficile_ATCC_43598_Contig_183, whole genome shotgun sequence

⇒Summary: seq-len = 5090 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4493-4587 bp Zoom in on locus 1 x2 CRISPR array Location: 4493-4587 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4493-4587 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4493-4587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: WBMC01000054.1 Clostridioides difficile strain ATCC 43598 C_difficile_ATCC_43598_Contig_54, whole genome shotgun sequence

⇒Summary: seq-len = 22976 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2366-2526 bp Zoom in on locus 1 x3 CRISPR array Location: 2366-2526 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2366-2526 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2366-2526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: WBMC01000006.1 Clostridioides difficile strain ATCC 43598 C_difficile_ATCC_43598_Contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 65516 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17891-21767 bp Zoom in on locus 1 x2 x14 x6 x2 CRISPR array Location: 17891-17985 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17891-17985 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19767-20653 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 19767-20653 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 21256-21613 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 21256-21613 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 21675-21767 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 21675-21767 bp Num of repeats: 2 Spacers: s20-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17891-17985 bp]: array | spacers
           [Locus range 19767-20653 bp]: array | spacers
           [Locus range 21256-21613 bp]: array | spacers
           [Locus range 21675-21767 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: WBMC01000025.1 Clostridioides difficile strain ATCC 43598 C_difficile_ATCC_43598_Contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 40292 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63-6552 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 63-800 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 805-2271 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2291-3304 bp Gene: cd09693:cas5 Type: Type-I Location: 3320-4117 bp Gene: cd09641:cas3HD Type: Type-I Location: 4144-6552 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: WBMC01000204.1 Clostridioides difficile strain ATCC 43598 C_difficile_ATCC_43598_Contig_204, whole genome shotgun sequence

⇒Summary: seq-len = 3875 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107-726 bp Zoom in on locus 1 x10 CRISPR array Location: 107-726 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 107-726 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107-726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)