CRISPRone

CRISPRone report for GCA_009024655.1_ASM902465v1

♦ Seq 1: WCHZ01000005.1 Bacteroides fragilis strain AD135F_2B NODE_5_length_405616_cov_70.666378, whole genome shotgun sequence

⇒Summary: seq-len = 405616 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1474-9886 bp Zoom in on locus 1 x21 CRISPR array Location: 1474-3051 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1474-3051 bp Num of repeats: 21 Spacers: s1-s20 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3160-3492 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3496-4428 bp Gene: unk Type: unknown Location: 4548-4856 bp Gene: unk Type: unknown Location: 4923-5447 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5463-9773 bp antiRepeat Location: 9841-9886 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1474-3051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WCHZ01000003.1 Bacteroides fragilis strain AD135F_2B NODE_3_length_666976_cov_68.901544, whole genome shotgun sequence

⇒Summary: seq-len = 666976 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 542910-546523 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 542910-543809 bp Gene: unk Type: unknown Location: 543806-545071 bp Gene: unk Type: unknown Location: 545079-545852 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 545855-546523 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WCHZ01000011.1 Bacteroides fragilis strain AD135F_2B NODE_11_length_192806_cov_58.361570, whole genome shotgun sequence

⇒Summary: seq-len = 192806 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147480-162977 bp Zoom in on locus 1 x27 CRISPR array Location: 147480-149347 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 147480-149347 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 149795-150085 bp Gene: cd09634:cas1 Type: universal Location: 150079-152349 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 152369-153313 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 153316-153726 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 153739-154578 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 154591-155739 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 155732-157534 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 157539-158948 bp Gene: unk Type: unknown Location: 158962-159441 bp Gene: cash17:cash17 Type: Type- Location: 159438-160865 bp Gene: unk Type: unknown Location: 160910-161689 bp Gene: unk Type: unknown Location: 161665-162291 bp Gene: cls000004:cas6 Type: other Location: 162309-162977 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 147480-149347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)