CRISPRone

CRISPRone report for GCA_009025765.1_ASM902576v1

♦ Seq 1: WCHS01000016.1 Pseudomonas aeruginosa strain GO32 NODE_16_length_192163_cov_16.336734, whole genome shotgun sequence

⇒Summary: seq-len = 192163 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15028-20388 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 15028-16068 bp Gene: unk Type: unknown Location: 16065-17543 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 17569-19959 bp Gene: cls001593:casR Type: Type-I Location: 20071-20388 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WCHS01000060.1 Pseudomonas aeruginosa strain GO32 NODE_60_length_1431_cov_18.769172, whole genome shotgun sequence

⇒Summary: seq-len = 1431 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146-1254 bp Zoom in on locus 1 x19 CRISPR array Location: 146-1254 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 146-1254 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 146-1254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WCHS01000018.1 Pseudomonas aeruginosa strain GO32 NODE_18_length_143504_cov_24.559023, whole genome shotgun sequence

⇒Summary: seq-len = 143504 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178-926 bp Zoom in on locus 1 x13 CRISPR array Location: 178-926 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 178-926 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178-926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: WCHS01000034.1 Pseudomonas aeruginosa strain GO32 NODE_34_length_47544_cov_27.884071, whole genome shotgun sequence

⇒Summary: seq-len = 47544 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37565-47400 bp Zoom in on locus 1 x11 x5 CRISPR array Location: 37565-38193 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 37565-38193 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 38377-38940 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38944-39972 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39983-40966 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40953-42254 bp Gene: COG1203:cas3 Type: Type-I Location: 42665-45901 bp Gene: cd09718:cas1 Type: universal Location: 45898-46872 bp CRISPR array Location: 47133-47400 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 47133-47400 bp Num of repeats: 5 Spacers: s11-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37565-38193 bp]: array | spacers
           [Locus range 47133-47400 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)