CRISPRone

CRISPRone report for GCA_009299575.1_ASM929957v1

♦ Seq 1: VMNO01000010.1 Pseudomonas aeruginosa strain PA28 NODE_10_length_88963_cov_37.205522, whole genome shotgun sequence

⇒Summary: seq-len = 88963 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52274-63792 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 52274-53619 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 52274-53619 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 53803-54366 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54370-55398 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55409-56392 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56379-57683 bp Gene: COG1203:cas3 Type: Type-I Location: 57741-60971 bp Gene: cd09718:cas1 Type: universal Location: 60968-61942 bp CRISPR array Location: 62204-63792 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 62204-63792 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52274-53619 bp]: array | spacers
           [Locus range 62204-63792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VMNO01000168.1 Pseudomonas aeruginosa strain PA28 NODE_168_length_12062_cov_42.481769, whole genome shotgun sequence

⇒Summary: seq-len = 12062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11259-12067 bp Zoom in on locus 1 x14 CRISPR array Location: 11259-12067 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 11259-12067 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11259-12067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VMNO01000129.1 Pseudomonas aeruginosa strain PA28 NODE_129_length_18562_cov_56.579172, whole genome shotgun sequence

⇒Summary: seq-len = 18562 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2696-7067 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 2696-3538 bp Gene: unk Type: unknown Location: 3816-4037 bp Gene: unk Type: unknown Location: 4038-4232 bp Gene: pfam13280:WYL Type: other Location: 4280-5296 bp Gene: mkCas0115:csx3 Type: other Location: 5355-7067 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VMNO01000192.1 Pseudomonas aeruginosa strain PA28 NODE_192_length_9509_cov_41.656064, whole genome shotgun sequence

⇒Summary: seq-len = 9509 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9309-9516 bp Zoom in on locus 1 x4 CRISPR array Location: 9309-9516 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 9309-9516 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9309-9516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)