CRISPRone

CRISPRone report for GCA_009299705.1_ASM929970v1

♦ Seq 1: VMNS01000313.1 Pseudomonas aeruginosa strain PA152 NODE_313_length_6959_cov_2.790984, whole genome shotgun sequence

⇒Summary: seq-len = 6959 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 647-6958 bp Zoom in on locus 1 x20 CRISPR array Location: 647-1834 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 647-1834 bp Num of repeats: 20 Spacers: s1-s19 Gene: pfam09707:cas2 Type: universal Location: 1899-2198 bp Gene: cd09719:cas1 Type: universal Location: 2195-3085 bp Gene: pfam08798:cas6e Type: other Location: 3112-3651 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3698-4360 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4362-5504 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5514-6044 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 6041-6958 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 647-1834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VMNS01000241.1 Pseudomonas aeruginosa strain PA152 NODE_241_length_9255_cov_2.286481, whole genome shotgun sequence

⇒Summary: seq-len = 9255 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1768-2162 bp Zoom in on locus 1 x7 CRISPR array Location: 1768-2162 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1768-2162 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1768-2162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VMNS01000126.1 Pseudomonas aeruginosa strain PA152 NODE_126_length_15414_cov_2.923137, whole genome shotgun sequence

⇒Summary: seq-len = 15414 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3129-14355 bp Zoom in on locus 1 x25 x19 CRISPR array Location: 3129-4599 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 3129-4599 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 4848-5411 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5415-6443 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6454-7437 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7424-8728 bp Gene: COG1203:cas3 Type: Type-I Location: 8786-12016 bp Gene: cd09718:cas1 Type: universal Location: 12013-12987 bp CRISPR array Location: 13248-14355 bp Num of repeats: 19 Spacers: s25-s42 CRISPR array Location: 13248-14355 bp Num of repeats: 19 Spacers: s25-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3129-4599 bp]: array | spacers
           [Locus range 13248-14355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VMNS01000006.1 Pseudomonas aeruginosa strain PA152 NODE_6_length_61084_cov_3.954296, whole genome shotgun sequence

⇒Summary: seq-len = 61084 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18732-25917 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 18732-19604 bp Gene: pfam13280:WYL Type: other Location: 19839-20885 bp Gene: pfam13280:WYL Type: other Location: 24859-25917 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)