CRISPRone

CRISPRone report for GCA_009299715.1_ASM929971v1

♦ Seq 1: VMNT01000105.1 Pseudomonas aeruginosa strain PA155 NODE_105_length_21995_cov_3.470048, whole genome shotgun sequence

⇒Summary: seq-len = 21995 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11410-21789 bp Zoom in on locus 1 x15 x16 CRISPR array Location: 11410-12278 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 11410-12278 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 12461-13024 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 13028-14056 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 14067-15050 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 15037-16341 bp Gene: COG1203:cas3 Type: Type-I Location: 16399-19629 bp Gene: cd09718:cas1 Type: universal Location: 19626-20600 bp CRISPR array Location: 20861-21789 bp Num of repeats: 16 Spacers: s15-s29 CRISPR array Location: 20861-21789 bp Num of repeats: 16 Spacers: s15-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11410-12278 bp]: array | spacers
           [Locus range 20861-21789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VMNT01000318.1 Pseudomonas aeruginosa strain PA155 NODE_318_length_2091_cov_4.149695, whole genome shotgun sequence

⇒Summary: seq-len = 2091 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207-1315 bp Zoom in on locus 1 x19 CRISPR array Location: 207-1315 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 207-1315 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207-1315 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VMNT01000026.1 Pseudomonas aeruginosa strain PA155 NODE_26_length_49903_cov_4.999317, whole genome shotgun sequence

⇒Summary: seq-len = 49903 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34821-41332 bp Zoom in on locus 1 x13 Gene: pfam03787:csm3gr7 Type: Type-III Location: 34821-35921 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 35909-36463 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 36477-38690 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 38690-39370 bp Gene: COG1518:cas1 Type: universal Location: 39375-40244 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 40225-40560 bp CRISPR array Location: 40584-41332 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 40584-41332 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40584-41332 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)