CRISPRone

CRISPRone report for GCA_009299775.1_ASM929977v1

♦ Seq 1: VMNV01000045.1 Pseudomonas aeruginosa strain PA45 scaffold_44, whole genome shotgun sequence

⇒Summary: seq-len = 48085 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38268-47936 bp Zoom in on locus 1 x23 CRISPR array Location: 38268-39613 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38268-39613 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39797-40360 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40364-41392 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41403-42386 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42373-43677 bp Gene: COG1203:cas3 Type: Type-I Location: 43735-46965 bp Gene: cd09718:cas1 Type: universal Location: 46962-47936 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38268-39613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VMNV01000002.1 Pseudomonas aeruginosa strain PA45 scaffold_1, whole genome shotgun sequence

⇒Summary: seq-len = 351739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 350447-351374 bp Zoom in on locus 1 x16 CRISPR array Location: 350447-351374 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 350447-351374 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 350447-351374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VMNV01000023.1 Pseudomonas aeruginosa strain PA45 scaffold_22, whole genome shotgun sequence

⇒Summary: seq-len = 120275 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98307-106568 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98307-99917 bp Gene: pfam13280:WYL Type: other Location: 100078-101094 bp Gene: COG2378:WYL Type: other Location: 101836-102678 bp Gene: unk Type: unknown Location: 102809-103096 bp Gene: unk Type: unknown Location: 103231-103809 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104202-106568 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: VMNV01000078.1 Pseudomonas aeruginosa strain PA45 scaffold_77, whole genome shotgun sequence

⇒Summary: seq-len = 2116 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 364-2013 bp Zoom in on locus 1 x28 CRISPR array Location: 364-2013 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 364-2013 bp Num of repeats: 28 Spacers: s1-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 364-2013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)