CRISPRone

CRISPRone report for GCA_009362915.1_ASM936291v1

♦ Seq 1: CP045224.1 Clostridioides difficile strain TW11 chromosome, complete genome

⇒Summary: seq-len = 4100340 bp; # of CRISPR array = 6; # of cas gene = 26  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 769375-781074 bp 2 Locus 2: 1068945-1071876 bp 3 Locus 3: 1426650-1434977 bp 4 Locus 4: 1487580-1498533 bp 5 Locus 5: 1786185-1797838 bp 6 Locus 6: 1905827-1906641 bp 7 Locus 7: 2318759-2319907 bp 8 Locus 8: 2802314-2802940 bp Zoom in on locus 1 x33 Zoom in on locus 2 x45 Zoom in on locus 3 Zoom in on locus 4 Zoom in on locus 5 x40 Zoom in on locus 6 x13 Zoom in on locus 7 x18 Zoom in on locus 8 x10 Gene: pfam13280:WYL Type: other Location: 769375-770328 bp Gene: pfam01881:cas6 Type: other Location: 770349-771143 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 771149-772999 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 773001-773915 bp Gene: cd09693:cas5 Type: Type-I Location: 773917-774618 bp Gene: COG1203:cas3 Type: Type-I Location: 774629-776950 bp Gene: pfam01930:cas4 Type: Type-I Location: 776965-777516 bp Gene: cd09722:cas1 Type: universal Location: 777519-778499 bp Gene: cd09725:cas2 Type: universal Location: 778502-778768 bp CRISPR array Location: 778952-781074 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 778952-781074 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 1068945-1071876 bp Num of repeats: 45 Spacers: s33-s76 CRISPR array Location: 1068945-1071876 bp Num of repeats: 45 Spacers: s33-s76 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1426650-1427759 bp Gene: unk Type: unknown Location: 1428212-1428388 bp Gene: pfam01881:cas6 Type: other Location: 1428489-1429226 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1429231-1430697 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1430716-1431729 bp Gene: cd09693:cas5 Type: Type-I Location: 1431745-1432542 bp Gene: cd09641:cas3HD Type: Type-I Location: 1432569-1434977 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1487580-1488065 bp Gene: cd06127:DEDDh Type: Type-I Location: 1494880-1495917 bp Gene: unk Type: unknown Location: 1496281-1496787 bp Gene: unk Type: unknown Location: 1497200-1497868 bp Gene: cd06127:DEDDh Type: Type-I Location: 1498027-1498533 bp Gene: cd09652:cas6 Type: other Location: 1786185-1786880 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1786892-1788631 bp Gene: pfam05107:cas7b Type: Type-I Location: 1788624-1789613 bp Gene: cd09693:cas5 Type: Type-I Location: 1789615-1790355 bp Gene: cd09641:cas3HD Type: Type-I Location: 1790379-1792937 bp CRISPR array Location: 1793127-1795726 bp Num of repeats: 40 Spacers: s77-s115 CRISPR array Location: 1793127-1795726 bp Num of repeats: 40 Spacers: s77-s115 Gene: unk Type: unknown Location: 1794974-1795102 bp Gene: pfam01930:cas4 Type: Type-I Location: 1795810-1796304 bp Gene: cd09722:cas1 Type: universal Location: 1796339-1797337 bp Gene: cd09725:cas2 Type: universal Location: 1797548-1797838 bp CRISPR array Location: 1905827-1906641 bp Num of repeats: 13 Spacers: s116-s127 CRISPR array Location: 1905827-1906641 bp Num of repeats: 13 Spacers: s116-s127 CRISPR array Location: 2318759-2319907 bp Num of repeats: 18 Spacers: s128-s144 CRISPR array Location: 2318759-2319907 bp Num of repeats: 18 Spacers: s128-s144 CRISPR array Location: 2802314-2802940 bp Num of repeats: 10 Spacers: s145-s153 CRISPR array Location: 2802314-2802940 bp Num of repeats: 10 Spacers: s145-s153 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 778952-781074 bp]: array | spacers
           [Locus range 1068945-1071876 bp]: array | spacers
           [Locus range 1793127-1795726 bp]: array | spacers
           [Locus range 1905827-1906641 bp]: array | spacers
           [Locus range 2318759-2319907 bp]: array | spacers
           [Locus range 2802314-2802940 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)