CRISPRone

CRISPRone report for GCA_009498355.1_ASM949835v1

♦ Seq 1: CP042967.1 Pseudomonas aeruginosa PA99 chromosome, complete genome

⇒Summary: seq-len = 6946480 bp; # of CRISPR array = 4; # of cas gene = 19  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 700402-710604 bp 2 Locus 2: 5823803-5830923 bp 3 Locus 3: 6248601-6259945 bp Zoom in on locus 1 x12 x5 Zoom in on locus 2 Zoom in on locus 3 x26 x20 CRISPR array Location: 700402-701101 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 700402-701101 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09707:cas2 Type: universal Location: 701166-701465 bp Gene: cd09719:cas1 Type: universal Location: 701462-702352 bp Gene: pfam08798:cas6e Type: other Location: 702379-702918 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 702965-703627 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 703629-704771 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 704781-705311 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 705308-706876 bp Gene: COG1203:cas3 Type: Type-I Location: 706879-708183 bp Gene: cd09641:cas3HD Type: Type-I Location: 708162-709475 bp CRISPR array Location: 710332-710604 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 710332-710604 bp Num of repeats: 5 Spacers: s12-s15 Gene: pfam13280:WYL Type: other Location: 5823803-5824798 bp Gene: pfam13280:WYL Type: other Location: 5828770-5829816 bp Gene: pfam13280:WYL Type: other Location: 5830051-5830923 bp CRISPR array Location: 6248601-6250131 bp Num of repeats: 26 Spacers: s16-s40 CRISPR array Location: 6248601-6250131 bp Num of repeats: 26 Spacers: s16-s40 Gene: cd09739:cas6f Type: other Location: 6250380-6250943 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6250947-6251975 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6251986-6252969 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6252956-6254284 bp Gene: COG1203:cas3 Type: Type-I Location: 6254317-6256698 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 6256620-6257546 bp Gene: cd09718:cas1 Type: universal Location: 6257543-6258517 bp CRISPR array Location: 6258778-6259945 bp Num of repeats: 20 Spacers: s41-s59 CRISPR array Location: 6258778-6259945 bp Num of repeats: 20 Spacers: s41-s59 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 700402-701101 bp]: array | spacers
           [Locus range 710332-710604 bp]: array | spacers
           [Locus range 6248601-6250131 bp]: array | spacers
           [Locus range 6258778-6259945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)