CRISPRone

CRISPRone report for GCA_009650455.1_ASM965045v1

♦ Seq 1: VTDC01000025.1 Pseudomonas aeruginosa strain 2596 NODE_25_length_97677_cov_12.016503, whole genome shotgun sequence

⇒Summary: seq-len = 97677 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53384-63768 bp Zoom in on locus 1 x12 x18 CRISPR array Location: 53384-54072 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 53384-54072 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 54321-54884 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54888-55916 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55927-56910 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56897-58201 bp Gene: COG1203:cas3 Type: Type-I Location: 58259-61489 bp Gene: cd09718:cas1 Type: universal Location: 61486-62460 bp CRISPR array Location: 62721-63768 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 62721-63768 bp Num of repeats: 18 Spacers: s12-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53384-54072 bp]: array | spacers
           [Locus range 62721-63768 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VTDC01000016.1 Pseudomonas aeruginosa strain 2596 NODE_16_length_164950_cov_23.407847, whole genome shotgun sequence

⇒Summary: seq-len = 164950 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40501-53591 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 40501-40806 bp Gene: unk Type: unknown Location: 41342-41932 bp Gene: cd09641:cas3HD Type: Type-I Location: 41748-43607 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53274-53591 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)