CRISPRone

CRISPRone report for GCA_009650545.1_ASM965054v1

♦ Seq 1: VTDD01000004.1 Pseudomonas aeruginosa strain 2600 NODE_4_length_405310_cov_16.198998, whole genome shotgun sequence

⇒Summary: seq-len = 405310 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 403883-404930 bp Zoom in on locus 1 x18 CRISPR array Location: 403883-404930 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 403883-404930 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 403883-404930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VTDD01000033.1 Pseudomonas aeruginosa strain 2600 NODE_33_length_48471_cov_14.516298, whole genome shotgun sequence

⇒Summary: seq-len = 48471 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37589-48090 bp Zoom in on locus 1 x16 x17 CRISPR array Location: 37589-38517 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37589-38517 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38699-39262 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39266-40294 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40305-41288 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41275-42579 bp Gene: COG1203:cas3 Type: Type-I Location: 42637-45867 bp Gene: cd09718:cas1 Type: universal Location: 45864-46838 bp CRISPR array Location: 47099-48090 bp Num of repeats: 17 Spacers: s16-s31 CRISPR array Location: 47099-48090 bp Num of repeats: 17 Spacers: s16-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37589-38517 bp]: array | spacers
           [Locus range 47099-48090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VTDD01000018.1 Pseudomonas aeruginosa strain 2600 NODE_18_length_115731_cov_16.896583, whole genome shotgun sequence

⇒Summary: seq-len = 115731 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87232-97303 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 87232-90411 bp Gene: unk Type: unknown Location: 90776-92110 bp Gene: pfam13280:WYL Type: other Location: 92239-93114 bp Gene: unk Type: unknown Location: 93252-93914 bp Gene: unk Type: unknown Location: 93896-94126 bp Gene: cd09639:cas3 Type: Type-I Location: 94178-97303 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)