CRISPRone

CRISPRone report for GCA_009725015.1_ULIV_Paeru4068_1.0

♦ Seq 1: WOFT01000001.1 Pseudomonas aeruginosa strain 4068 4068-unitig_9, whole genome shotgun sequence

⇒Summary: seq-len = 5723207 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3937465-3944587 bp 2 Locus 2: 4401187-4411389 bp 3 Locus 3: 4805862-4806789 bp Zoom in on locus 1 Zoom in on locus 2 x17 x11 Zoom in on locus 3 x16 Gene: pfam13280:WYL Type: other Location: 3937465-3938460 bp Gene: pfam13280:WYL Type: other Location: 3942434-3943480 bp Gene: pfam13280:WYL Type: other Location: 3943715-3944587 bp CRISPR array Location: 4401187-4402175 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 4401187-4402175 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 4402358-4402921 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4402925-4403953 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 4403964-4404947 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4404934-4406238 bp Gene: COG1203:cas3 Type: Type-I Location: 4406296-4409526 bp Gene: cd09718:cas1 Type: universal Location: 4409523-4410497 bp CRISPR array Location: 4410762-4411389 bp Num of repeats: 11 Spacers: s17-s26 CRISPR array Location: 4410762-4411389 bp Num of repeats: 11 Spacers: s17-s26 CRISPR array Location: 4805862-4806789 bp Num of repeats: 16 Spacers: s27-s41 CRISPR array Location: 4805862-4806789 bp Num of repeats: 16 Spacers: s27-s41 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4401187-4402175 bp]: array | spacers
           [Locus range 4410762-4411389 bp]: array | spacers
           [Locus range 4805862-4806789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WOFT01000002.1 Pseudomonas aeruginosa strain 4068 4068-unitig_7, whole genome shotgun sequence

⇒Summary: seq-len = 1318723 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 791935-798723 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 791935-795156 bp Gene: pfam13280:WYL Type: other Location: 795169-796077 bp Gene: unk Type: unknown Location: 796357-797247 bp Gene: unk Type: unknown Location: 797382-797699 bp Gene: mkCas0115:csx3 Type: other Location: 797692-798723 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)