CRISPRone

CRISPRone report for GCA_009727245.1_ASM972724v1

♦ Seq 1: WOAJ01000002.1 Pseudomonas aeruginosa strain PA206 NODE_2_length_845090_cov_23.665650, whole genome shotgun sequence

⇒Summary: seq-len = 845090 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 724118-735243 bp Zoom in on locus 1 x17 x15 CRISPR array Location: 724118-725123 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 724118-725123 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 725188-725487 bp Gene: cd09719:cas1 Type: universal Location: 725484-726374 bp Gene: pfam08798:cas6e Type: other Location: 726401-726940 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 726987-727649 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 727652-728794 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 728804-729334 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 729331-730899 bp Gene: cd09641:cas3HD Type: Type-I Location: 730902-733583 bp CRISPR array Location: 734360-735243 bp Num of repeats: 15 Spacers: s17-s30 CRISPR array Location: 734360-735243 bp Num of repeats: 15 Spacers: s17-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 724118-725123 bp]: array | spacers
           [Locus range 734360-735243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WOAJ01000012.1 Pseudomonas aeruginosa strain PA206 NODE_12_length_217669_cov_26.595457, whole genome shotgun sequence

⇒Summary: seq-len = 217669 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26096-26483 bp 2 Locus 2: 111368-111816 bp Zoom in on locus 1 x7 Zoom in on locus 2 x8 CRISPR array Location: 26096-26483 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 26096-26483 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 111368-111816 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 111368-111816 bp Num of repeats: 8 Spacers: s7-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26096-26483 bp]: array | spacers
           [Locus range 111368-111816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)