CRISPRone

CRISPRone report for GCA_009727295.1_ASM972729v1

♦ Seq 1: WOAI01000011.1 Pseudomonas aeruginosa strain PA216 NODE_11_length_120204_cov_26.841627, whole genome shotgun sequence

⇒Summary: seq-len = 120204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1021-1169 bp Zoom in on locus 1 x3 CRISPR array Location: 1021-1169 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1021-1169 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1021-1169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WOAI01000001.1 Pseudomonas aeruginosa strain PA216 NODE_1_length_1428555_cov_24.967143, whole genome shotgun sequence

⇒Summary: seq-len = 1428555 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1046781-1056536 bp Zoom in on locus 1 x30 CRISPR array Location: 1046781-1048744 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 1046781-1048744 bp Num of repeats: 30 Spacers: s1-s29 Gene: cd09725:cas2 Type: universal Location: 1048926-1049216 bp Gene: cd09721:cas1 Type: universal Location: 1049226-1050266 bp Gene: pfam01930:cas4 Type: Type-I Location: 1050270-1050902 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 1050921-1051790 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 1051787-1053580 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 1053577-1054251 bp Gene: cd09641:cas3HD Type: Type-I Location: 1054302-1056536 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1046781-1048744 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)