CRISPRone

CRISPRone report for GCA_009727405.1_ASM972740v1

♦ Seq 1: WOAR01000002.1 Pseudomonas aeruginosa strain PA176 NODE_2_length_612508_cov_23.964761, whole genome shotgun sequence

⇒Summary: seq-len = 612508 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1733-12318 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1733-2602 bp Gene: pfam00078:RT Type: other Location: 7511-8779 bp Gene: unk Type: unknown Location: 8929-9327 bp Gene: unk Type: unknown Location: 9511-9690 bp Gene: cls000170:cas4 Type: Type-I Location: 10774-12318 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WOAR01000024.1 Pseudomonas aeruginosa strain PA176 NODE_24_length_88369_cov_20.713243, whole genome shotgun sequence

⇒Summary: seq-len = 88369 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41266-51946 bp Zoom in on locus 1 x26 x10 CRISPR array Location: 41266-42794 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 41266-42794 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09718:cas1 Type: universal Location: 43055-44029 bp Gene: COG1203:cas3 Type: Type-I Location: 44026-47256 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 47314-48618 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 48605-49588 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 49599-50627 bp Gene: cd09739:cas6f Type: other Location: 50631-51194 bp CRISPR array Location: 51379-51946 bp Num of repeats: 10 Spacers: s26-s34 CRISPR array Location: 51379-51946 bp Num of repeats: 10 Spacers: s26-s34 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41266-42794 bp]: array | spacers
           [Locus range 51379-51946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WOAR01000033.1 Pseudomonas aeruginosa strain PA176 NODE_33_length_48702_cov_27.263245, whole genome shotgun sequence

⇒Summary: seq-len = 48702 bp; # of CRISPR array = 0; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17513-34257 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 17513-18505 bp Gene: unk Type: unknown Location: 18589-19461 bp Gene: unk Type: unknown Location: 19497-20063 bp Gene: cd09637:cas4 Type: other Location: 20071-22722 bp Gene: pfam13280:WYL Type: other Location: 29524-30648 bp Gene: pfam13280:WYL Type: other Location: 33382-34257 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: WOAR01000003.1 Pseudomonas aeruginosa strain PA176 NODE_3_length_577965_cov_20.967107, whole genome shotgun sequence

⇒Summary: seq-len = 577965 bp; # of CRISPR array = 0; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89316-112710 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 89316-90602 bp Gene: unk Type: unknown Location: 91585-91920 bp Gene: unk Type: unknown Location: 91984-93321 bp Gene: pfam00078:RT Type: other Location: 94252-95550 bp Gene: pfam00078:RT Type: other Location: 100813-102318 bp Gene: mkCas0090:PD-DExK Type: other Location: 111985-112710 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)