CRISPRone

CRISPRone report for GCA_009730495.1_ASM973049v1

♦ Seq 1: CP046327.1 Clostridioides difficile strain FDAARGOS_723 chromosome, complete genome

⇒Summary: seq-len = 4178106 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 333512-341387 bp 2 Locus 2: 801637-802263 bp 3 Locus 3: 843883-843978 bp 4 Locus 4: 1151755-1152578 bp 5 Locus 5: 1289857-1292367 bp 6 Locus 6: 1384751-1385044 bp 7 Locus 7: 1415768-1419781 bp 8 Locus 8: 1495729-1496415 bp 9 Locus 9: 1704804-1705761 bp 10 Locus 10: 3682504-3689037 bp 11 Locus 11: 3924886-3935195 bp Zoom in on locus 1 Zoom in on locus 2 x10 Zoom in on locus 3 x2 Zoom in on locus 4 x13 Zoom in on locus 5 x5 x6 Zoom in on locus 6 x5 Zoom in on locus 7 Zoom in on locus 8 x11 Zoom in on locus 9 x15 Zoom in on locus 10 x10 Zoom in on locus 11 x25 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 333512-334621 bp Gene: pfam01881:cas6 Type: other Location: 334880-335617 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 335622-337097 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 337117-338130 bp Gene: cd09693:cas5 Type: Type-I Location: 338146-338952 bp Gene: cd09641:cas3HD Type: Type-I Location: 338979-341387 bp CRISPR array Location: 801637-802263 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 801637-802263 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 843883-843978 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 843883-843978 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 1151755-1152578 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 1151755-1152578 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 1289857-1290146 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 1289857-1290146 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 1292011-1292367 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 1292011-1292367 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 1384751-1385044 bp Num of repeats: 5 Spacers: s32-s35 CRISPR array Location: 1384751-1385044 bp Num of repeats: 5 Spacers: s32-s35 Gene: cas14:cas14 Type: Type-V Location: 1415768-1416886 bp Gene: COG2378:WYL Type: other Location: 1417525-1418436 bp Gene: unk Type: unknown Location: 1418547-1419014 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1419182-1419781 bp CRISPR array Location: 1495729-1496415 bp Num of repeats: 11 Spacers: s36-s45 CRISPR array Location: 1495729-1496415 bp Num of repeats: 11 Spacers: s36-s45 CRISPR array Location: 1704804-1705761 bp Num of repeats: 15 Spacers: s46-s59 CRISPR array Location: 1704804-1705761 bp Num of repeats: 15 Spacers: s46-s59 Gene: cd09693:cas5 Type: Type-I Location: 3682504-3683151 bp Gene: pfam01881:cas6 Type: other Location: 3683142-3683906 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3683908-3685074 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3685095-3686165 bp Gene: COG1203:cas3 Type: Type-I Location: 3686176-3688161 bp CRISPR array Location: 3688414-3689037 bp Num of repeats: 10 Spacers: s60-s68 CRISPR array Location: 3688414-3689037 bp Num of repeats: 10 Spacers: s60-s68 Gene: pfam13280:WYL Type: other Location: 3924886-3925773 bp Gene: pfam01881:cas6 Type: other Location: 3925851-3926588 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3926594-3928471 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3928473-3929387 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3929389-3930090 bp Gene: COG1203:cas3 Type: Type-I Location: 3930101-3932422 bp Gene: pfam01930:cas4 Type: Type-I Location: 3932437-3932988 bp Gene: cd09722:cas1 Type: universal Location: 3932991-3933971 bp Gene: cd09725:cas2 Type: universal Location: 3933974-3934240 bp CRISPR array Location: 3934424-3936042 bp Num of repeats: 25 Spacers: s69-s92 CRISPR array Location: 3934424-3936042 bp Num of repeats: 25 Spacers: s69-s92 Gene: unk Type: unknown Location: 3934573-3934740 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3934962-3935195 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 801637-802263 bp]: array | spacers
           [Locus range 843883-843978 bp]: array | spacers
           [Locus range 1151755-1152578 bp]: array | spacers
           [Locus range 1289857-1290146 bp]: array | spacers
           [Locus range 1292011-1292367 bp]: array | spacers
           [Locus range 1384751-1385044 bp]: array | spacers
           [Locus range 1495729-1496415 bp]: array | spacers
           [Locus range 1704804-1705761 bp]: array | spacers
           [Locus range 3688414-3689037 bp]: array | spacers
           [Locus range 3934424-3936042 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)