CRISPRone

CRISPRone report for GCA_009788995.1_ASM978899v1

♦ Seq 1: VTFA01000019.1 Pseudomonas aeruginosa strain P8 NODE_19_length_108436_cov_13.543381, whole genome shotgun sequence

⇒Summary: seq-len = 108436 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37575-44972 bp 2 Locus 2: 84927-87793 bp Zoom in on locus 1 x24 Zoom in on locus 2 x7 CRISPR array Location: 37575-38983 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 37575-38983 bp Num of repeats: 24 Spacers: s1-s23 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 39166-39729 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39733-40761 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40772-41755 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41742-43046 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 43104-44972 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 84927-86174 bp Gene: cd09718:cas1 Type: universal Location: 86171-87145 bp CRISPR array Location: 87406-87793 bp Num of repeats: 7 Spacers: s24-s29 CRISPR array Location: 87406-87793 bp Num of repeats: 7 Spacers: s24-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37575-38983 bp]: array | spacers
           [Locus range 87406-87793 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VTFA01000002.1 Pseudomonas aeruginosa strain P8 NODE_2_length_392331_cov_14.612862, whole genome shotgun sequence

⇒Summary: seq-len = 392331 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 329513-330021 bp Zoom in on locus 1 x9 CRISPR array Location: 329513-330021 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 329513-330021 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 329513-330021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)