CRISPRone

CRISPRone report for GCA_009789035.1_ASM978903v1

♦ Seq 1: VTFE01000044.1 Pseudomonas aeruginosa strain P13 NODE_44_length_49844_cov_22.670073, whole genome shotgun sequence

⇒Summary: seq-len = 49844 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4388-14249 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 4388-6100 bp Gene: pfam13280:WYL Type: other Location: 6159-7175 bp Gene: unk Type: unknown Location: 8139-8378 bp Gene: unk Type: unknown Location: 8447-8677 bp Gene: unk Type: unknown Location: 8936-9469 bp Gene: pfam13280:WYL Type: other Location: 9484-10359 bp Gene: unk Type: unknown Location: 10409-10777 bp Gene: unk Type: unknown Location: 10843-11490 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 11883-14249 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: VTFE01000007.1 Pseudomonas aeruginosa strain P13 NODE_7_length_219920_cov_8.542397, whole genome shotgun sequence

⇒Summary: seq-len = 219920 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37277-47586 bp Zoom in on locus 1 x17 x13 CRISPR array Location: 37277-38265 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37277-38265 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 38448-39011 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39015-40043 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40054-41037 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41024-42328 bp Gene: COG1203:cas3 Type: Type-I Location: 42386-45616 bp Gene: cd09718:cas1 Type: universal Location: 45613-46587 bp CRISPR array Location: 46839-47586 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 46839-47586 bp Num of repeats: 13 Spacers: s17-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37277-38265 bp]: array | spacers
           [Locus range 46839-47586 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: VTFE01000036.1 Pseudomonas aeruginosa strain P13 NODE_36_length_63690_cov_11.293237, whole genome shotgun sequence

⇒Summary: seq-len = 63690 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 848-1296 bp Zoom in on locus 1 x8 CRISPR array Location: 848-1296 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 848-1296 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 848-1296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)