CRISPRone

CRISPRone report for GCA_009789055.1_ASM978905v1

♦ Seq 1: VTFD01000017.1 Pseudomonas aeruginosa strain P2 NODE_17_length_136644_cov_15.066732, whole genome shotgun sequence

⇒Summary: seq-len = 136644 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103590-114344 bp Zoom in on locus 1 x6 x5 x14 CRISPR array Location: 103590-103924 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 103590-103924 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 104018-104291 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 104018-104291 bp Num of repeats: 5 Spacers: s6-s9 Gene: cd09641:cas3HD Type: Type-I Location: 105063-107744 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 107747-109315 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 109312-109842 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 109852-110994 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 110996-111658 bp Gene: pfam08798:cas6e Type: other Location: 111633-112244 bp Gene: cd09719:cas1 Type: universal Location: 112271-112510 bp Gene: COG1518:cas1 Type: universal Location: 112559-113161 bp Gene: pfam09707:cas2 Type: universal Location: 113158-113457 bp CRISPR array Location: 113522-114344 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 113522-114344 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 103590-103924 bp]: array | spacers
           [Locus range 104018-104291 bp]: array | spacers
           [Locus range 113522-114344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)