CRISPRone

CRISPRone report for GCA_009807255.1_ASM980725v1

♦ Seq 1: WUDN01000090.1 Pseudomonas aeruginosa strain UMB0501 NODE_90_length_17363_cov_5.327628, whole genome shotgun sequence

⇒Summary: seq-len = 17363 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5934-15775 bp Zoom in on locus 1 x3 x2 x5 CRISPR array Location: 5934-6085 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5934-6085 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6179-6269 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 6179-6269 bp Num of repeats: 2 Spacers: s3-s3 Gene: cd09641:cas3HD Type: Type-I Location: 7043-9724 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 9727-11295 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 11292-11822 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 11832-12974 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 12976-13638 bp Gene: pfam08798:cas6e Type: other Location: 13613-14224 bp Gene: cd09719:cas1 Type: universal Location: 14251-15141 bp Gene: pfam09707:cas2 Type: universal Location: 15138-15437 bp CRISPR array Location: 15502-15775 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 15502-15775 bp Num of repeats: 5 Spacers: s4-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5934-6085 bp]: array | spacers
           [Locus range 6179-6269 bp]: array | spacers
           [Locus range 15502-15775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)