CRISPRone

CRISPRone report for GCA_009807265.1_ASM980726v1

♦ Seq 1: WUDE01000066.1 Pseudomonas aeruginosa strain UMB6995 NODE_66_length_39726_cov_3.746963, whole genome shotgun sequence

⇒Summary: seq-len = 39726 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343-10942 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 343-911 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 343-911 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1162-2136 bp Gene: COG1203:cas3 Type: Type-I Location: 2133-5363 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5774-7075 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7062-8045 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8056-9084 bp Gene: cd09739:cas6f Type: other Location: 9088-9651 bp CRISPR array Location: 9835-10942 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9835-10942 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 343-911 bp]: array | spacers
           [Locus range 9835-10942 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WUDE01000119.1 Pseudomonas aeruginosa strain UMB6995 NODE_119_length_17625_cov_4.412561, whole genome shotgun sequence

⇒Summary: seq-len = 17625 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-1094 bp Zoom in on locus 1 x13 CRISPR array Location: 345-1094 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 345-1094 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 345-1094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)