CRISPRone

CRISPRone report for GCA_009807275.1_ASM980727v1

♦ Seq 1: WUDH01000011.1 Pseudomonas aeruginosa strain UMB2261 NODE_11_length_113795_cov_5.148177, whole genome shotgun sequence

⇒Summary: seq-len = 113795 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7065-7572 bp Zoom in on locus 1 x9 CRISPR array Location: 7065-7572 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7065-7572 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7065-7572 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WUDH01000080.1 Pseudomonas aeruginosa strain UMB2261 NODE_80_length_20582_cov_5.313371, whole genome shotgun sequence

⇒Summary: seq-len = 20582 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8465-18978 bp Zoom in on locus 1 x5 x17 CRISPR array Location: 8465-8738 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8465-8738 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09641:cas3HD Type: Type-I Location: 9522-12194 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12197-13765 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 13762-14292 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14302-15444 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15446-16108 bp Gene: pfam08798:cas6e Type: other Location: 16083-16694 bp Gene: cd09719:cas1 Type: universal Location: 16721-17611 bp Gene: pfam09707:cas2 Type: universal Location: 17608-17907 bp CRISPR array Location: 17972-18978 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 17972-18978 bp Num of repeats: 17 Spacers: s5-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8465-8738 bp]: array | spacers
           [Locus range 17972-18978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WUDH01000020.1 Pseudomonas aeruginosa strain UMB2261 NODE_20_length_86680_cov_5.220570, whole genome shotgun sequence

⇒Summary: seq-len = 86680 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38163-44406 bp Zoom in on locus 1 x23 CRISPR array Location: 38163-39511 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38163-39511 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39761-40324 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40328-41356 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41367-42350 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42337-43641 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 43699-44406 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38163-39511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)