CRISPRone

CRISPRone report for GCA_009807295.1_ASM980729v1

♦ Seq 1: WUDI01000075.1 Pseudomonas aeruginosa strain UMB2253 NODE_75_length_24630_cov_4.758356, whole genome shotgun sequence

⇒Summary: seq-len = 24630 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12540-23053 bp Zoom in on locus 1 x5 x17 CRISPR array Location: 12540-12813 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 12540-12813 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09641:cas3HD Type: Type-I Location: 13597-16269 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 16272-17840 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 17837-18367 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 18377-19519 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 19521-20183 bp Gene: pfam08798:cas6e Type: other Location: 20158-20769 bp Gene: cd09719:cas1 Type: universal Location: 20796-21686 bp Gene: pfam09707:cas2 Type: universal Location: 21683-21982 bp CRISPR array Location: 22047-23053 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 22047-23053 bp Num of repeats: 17 Spacers: s5-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12540-12813 bp]: array | spacers
           [Locus range 22047-23053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WUDI01000022.1 Pseudomonas aeruginosa strain UMB2253 NODE_22_length_88765_cov_4.494686, whole genome shotgun sequence

⇒Summary: seq-len = 88765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78792-79299 bp Zoom in on locus 1 x9 CRISPR array Location: 78792-79299 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 78792-79299 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78792-79299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)