CRISPRone

CRISPRone report for GCA_009807395.1_ASM980739v1

♦ Seq 1: WUDJ01000019.1 Pseudomonas aeruginosa strain UMB2231 NODE_19_length_84269_cov_5.025980, whole genome shotgun sequence

⇒Summary: seq-len = 84269 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42275-48518 bp Zoom in on locus 1 x23 Gene: cd09673:cas3f Type: Subtype-I-F Location: 42275-42982 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 43040-44344 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 44331-45314 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 45325-46353 bp Gene: cd09739:cas6f Type: other Location: 46357-46920 bp CRISPR array Location: 47171-48518 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 47171-48518 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 47171-48518 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WUDJ01000010.1 Pseudomonas aeruginosa strain UMB2231 NODE_10_length_141904_cov_4.664233, whole genome shotgun sequence

⇒Summary: seq-len = 141904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78779-79286 bp Zoom in on locus 1 x9 CRISPR array Location: 78779-79286 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 78779-79286 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78779-79286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: WUDJ01000078.1 Pseudomonas aeruginosa strain UMB2231 NODE_78_length_21455_cov_4.856620, whole genome shotgun sequence

⇒Summary: seq-len = 21455 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9341-19854 bp Zoom in on locus 1 x5 x17 CRISPR array Location: 9341-9614 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 9341-9614 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09641:cas3HD Type: Type-I Location: 10398-13070 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 13073-14641 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14638-15168 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15178-16320 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16322-16984 bp Gene: pfam08798:cas6e Type: other Location: 16959-17570 bp Gene: cd09719:cas1 Type: universal Location: 17597-18487 bp Gene: pfam09707:cas2 Type: universal Location: 18484-18783 bp CRISPR array Location: 18848-19854 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 18848-19854 bp Num of repeats: 17 Spacers: s5-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9341-9614 bp]: array | spacers
           [Locus range 18848-19854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)