CRISPRone

CRISPRone report for GCA_009857765.1_ASM985776v1

♦ Seq 1: WWCE01000021.1 Pseudomonas aeruginosa strain 1163 NODE_21_length_111992_cov_36.3161, whole genome shotgun sequence

⇒Summary: seq-len = 111992 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110497-111604 bp Zoom in on locus 1 x19 CRISPR array Location: 110497-111604 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 110497-111604 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110497-111604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WWCE01000039.1 Pseudomonas aeruginosa strain 1163 NODE_39_length_46061_cov_36.1563, whole genome shotgun sequence

⇒Summary: seq-len = 46061 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 388-9507 bp Zoom in on locus 1 x3 x7 CRISPR array Location: 388-536 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 388-536 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 796-1770 bp Gene: COG1203:cas3 Type: Type-I Location: 1767-4997 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5055-6359 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6346-7329 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7340-8368 bp Gene: cd09739:cas6f Type: other Location: 8372-8935 bp CRISPR array Location: 9119-9507 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 9119-9507 bp Num of repeats: 7 Spacers: s3-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 388-536 bp]: array | spacers
           [Locus range 9119-9507 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)