CRISPRone

CRISPRone report for GCA_009867095.1_ASM986709v1

♦ Seq 1: CP029566.1 Clostridioides difficile strain CBA7204 chromosome, complete genome

⇒Summary: seq-len = 4038993 bp; # of CRISPR array = 10; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 472085-473763 bp 2 Locus 2: 685619-686504 bp 3 Locus 3: 796830-797392 bp 4 Locus 4: 886530-889445 bp 5 Locus 5: 1029624-1029914 bp 6 Locus 6: 1394243-1394929 bp 7 Locus 7: 1689543-1690556 bp 8 Locus 8: 1855540-1863396 bp 9 Locus 9: 1936693-1936918 bp 10 Locus 10: 2433290-2445044 bp Zoom in on locus 1 x26 Zoom in on locus 2 x14 Zoom in on locus 3 x9 Zoom in on locus 4 x15 x5 Zoom in on locus 5 x5 Zoom in on locus 6 x11 Zoom in on locus 7 x16 Zoom in on locus 8 Zoom in on locus 9 x4 Zoom in on locus 10 x34 CRISPR array Location: 472085-473763 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 472085-473763 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 685619-686504 bp Num of repeats: 14 Spacers: s26-s38 CRISPR array Location: 685619-686504 bp Num of repeats: 14 Spacers: s26-s38 CRISPR array Location: 796830-797392 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 796830-797392 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 886530-887501 bp Num of repeats: 15 Spacers: s47-s60 CRISPR array Location: 886530-887501 bp Num of repeats: 15 Spacers: s47-s60 CRISPR array Location: 889153-889445 bp Num of repeats: 5 Spacers: s61-s64 CRISPR array Location: 889153-889445 bp Num of repeats: 5 Spacers: s61-s64 CRISPR array Location: 1029624-1029914 bp Num of repeats: 5 Spacers: s65-s68 CRISPR array Location: 1029624-1029914 bp Num of repeats: 5 Spacers: s65-s68 CRISPR array Location: 1394243-1394929 bp Num of repeats: 11 Spacers: s69-s78 CRISPR array Location: 1394243-1394929 bp Num of repeats: 11 Spacers: s69-s78 CRISPR array Location: 1689543-1690556 bp Num of repeats: 16 Spacers: s79-s93 CRISPR array Location: 1689543-1690556 bp Num of repeats: 16 Spacers: s79-s93 Gene: cd09641:cas3HD Type: Type-I Location: 1855540-1857948 bp Gene: cd09693:cas5 Type: Type-I Location: 1857975-1858772 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1858788-1859801 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1859821-1861287 bp Gene: pfam01881:cas6 Type: other Location: 1861292-1862029 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1862287-1863396 bp CRISPR array Location: 1936693-1936918 bp Num of repeats: 4 Spacers: s94-s96 CRISPR array Location: 1936693-1936918 bp Num of repeats: 4 Spacers: s94-s96 CRISPR array Location: 2433290-2435479 bp Num of repeats: 34 Spacers: s97-s129 CRISPR array Location: 2433290-2435479 bp Num of repeats: 34 Spacers: s97-s129 Gene: cd09725:cas2 Type: universal Location: 2435663-2435929 bp Gene: cd09722:cas1 Type: universal Location: 2435932-2436912 bp Gene: pfam01930:cas4 Type: Type-I Location: 2436915-2437433 bp Gene: COG1203:cas3 Type: Type-I Location: 2437481-2439802 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2439813-2440514 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2440516-2441430 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2441432-2443309 bp Gene: pfam01881:cas6 Type: other Location: 2443315-2444109 bp Gene: pfam13280:WYL Type: other Location: 2444130-2445044 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 472085-473763 bp]: array | spacers
           [Locus range 685619-686504 bp]: array | spacers
           [Locus range 796830-797392 bp]: array | spacers
           [Locus range 886530-887501 bp]: array | spacers
           [Locus range 889153-889445 bp]: array | spacers
           [Locus range 1029624-1029914 bp]: array | spacers
           [Locus range 1394243-1394929 bp]: array | spacers
           [Locus range 1689543-1690556 bp]: array | spacers
           [Locus range 1936693-1936918 bp]: array | spacers
           [Locus range 2433290-2435479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)