CRISPRone

CRISPRone report for GCA_009887695.1_ASM988769v1

♦ Seq 1: WXZU01000002.1 Pseudomonas aeruginosa strain VNMU145 MRSN567286_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 580986 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 488735-489183 bp Zoom in on locus 1 x8 CRISPR array Location: 488735-489183 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 488735-489183 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 488735-489183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: WXZU01000009.1 Pseudomonas aeruginosa strain VNMU145 MRSN567286_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 69219 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37419-47728 bp Zoom in on locus 1 x17 x13 CRISPR array Location: 37419-38407 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37419-38407 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 38590-39153 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39157-40185 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40196-41179 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41166-42470 bp Gene: COG1203:cas3 Type: Type-I Location: 42528-45758 bp Gene: cd09718:cas1 Type: universal Location: 45755-46729 bp CRISPR array Location: 46981-47728 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 46981-47728 bp Num of repeats: 13 Spacers: s17-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37419-38407 bp]: array | spacers
           [Locus range 46981-47728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)